Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18077 | Canola | nucleus | 64.44 | 46.81 |
| CDX77461 | Canola | nucleus | 59.41 | 43.96 |
| CDX85164 | Canola | nucleus | 59.41 | 43.96 |
| AT3G24150.1 | Thale cress | nucleus | 58.58 | 40.82 |
| CDX72353 | Canola | cytosol | 33.89 | 33.47 |
| CDX68833 | Canola | nucleus | 35.56 | 32.95 |
| CDX75234 | Canola | cytosol | 34.73 | 32.55 |
| CDY13480 | Canola | cytosol | 34.73 | 31.92 |
| VIT_11s0016g05510.t01 | Wine grape | nucleus | 41.0 | 29.08 |
| KRH54950 | Soybean | nucleus | 40.59 | 28.78 |
| KRH20129 | Soybean | mitochondrion, nucleus | 43.51 | 25.81 |
| KRH03673 | Soybean | mitochondrion, nucleus | 43.51 | 24.64 |
| GSMUA_Achr11P... | Banana | nucleus | 38.08 | 23.82 |
| GSMUA_Achr6P20490_001 | Banana | mitochondrion | 37.24 | 23.55 |
| CDY45343 | Canola | nucleus | 2.51 | 20.0 |
| PGSC0003DMT400079381 | Potato | nucleus | 39.75 | 19.75 |
| Solyc07g008100.2.1 | Tomato | nucleus | 38.91 | 18.75 |
Protein Annotations
| EnsemblPlants:CDY45344 | EnsemblPlantsGene:GSBRNA2T00081821001 | PANTHER:PTHR35300 | PANTHER:PTHR35300:SF2 | ProteinID:CDY45344 | ProteinID:CDY45344.1 |
| SEG:seg | UniParc:UPI0004EE872C | UniProt:A0A078I7F3 | MapMan:15.5.53.5.2 | : | : |
Description
BnaC01g30480DBnaC01g30480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7F3]
Coordinates
chrLK032621:-:145492..146359
Molecular Weight (calculated)
26808.3 Da
IEP (calculated)
9.135
GRAVY (calculated)
-0.260
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRLGPRPYE CVKRAWHIDR HQPIRGFIIR QIFRLSMEAH SAATKKNKEW QEKLSVVVFK ADEIMYSKSN SEVLILTLVL CVFVYQNLAD FGGLTLTTET
101: GPLLPPCVEA ALNLGCTAVR ASISQRHSNV QTYLCPKFQQ PVSASTNEPQ YHHQAQKSNK PSPTAQPAIS VDVLDDSNNR GAAFLHESMQ VHQKPLARTL
201: GASTAPAPSQ RQSTWVWCIR CITEAIIRLS KWTCLQESL
101: GPLLPPCVEA ALNLGCTAVR ASISQRHSNV QTYLCPKFQQ PVSASTNEPQ YHHQAQKSNK PSPTAQPAIS VDVLDDSNNR GAAFLHESMQ VHQKPLARTL
201: GASTAPAPSQ RQSTWVWCIR CITEAIIRLS KWTCLQESL
001: MPRPGPRPYE CVKRAWHSDR HQPIRGSIIR QIFRLAMEAH SAATRKNKEW QEKLPVVVLK AEEIMYSKAN SEEEYTDADT MWNRVNDAID TIIRRDESTE
101: TGPLLPPCVE AALNLGCIAV RASRSQRHSS GRTYLGPKIQ EPVSASTNEP SYHHEYRQQA QQSSTKPSQT VQAAVPVDVL DNSNKRVATP RGYPFLHESM
201: QMHQKPLAIR QGTGPASAPA PAPVNLGSVY PLYYEGNNQT QQADMSFRVP EAPIIIGMPI GIKPSEEATE RVCDLSLRLG ISSEPSTRID VGSSRAYPGR
301: NQEELCLFAE VKKNDRFEWF SNSEGQNSDS RVKKHRTLCG DFL
101: TGPLLPPCVE AALNLGCIAV RASRSQRHSS GRTYLGPKIQ EPVSASTNEP SYHHEYRQQA QQSSTKPSQT VQAAVPVDVL DNSNKRVATP RGYPFLHESM
201: QMHQKPLAIR QGTGPASAPA PAPVNLGSVY PLYYEGNNQT QQADMSFRVP EAPIIIGMPI GIKPSEEATE RVCDLSLRLG ISSEPSTRID VGSSRAYPGR
301: NQEELCLFAE VKKNDRFEWF SNSEGQNSDS RVKKHRTLCG DFL
Arabidopsis Description
Uncharacterized protein At3g24150 [Source:UniProtKB/TrEMBL;Acc:Q0WQ76]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.