Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13480 | Canola | cytosol | 81.41 | 75.77 |
| CDX75234 | Canola | cytosol | 71.9 | 68.24 |
| AT4G32295.1 | Thale cress | cytosol | 66.94 | 68.07 |
| CDX68833 | Canola | nucleus | 71.07 | 66.67 |
| KRH61761 | Soybean | nucleus | 50.41 | 44.36 |
| KRH52430 | Soybean | nucleus | 50.41 | 44.04 |
| CDY45344 | Canola | nucleus | 33.47 | 33.89 |
| CDX77461 | Canola | nucleus | 44.21 | 33.13 |
| CDX85164 | Canola | nucleus | 44.21 | 33.13 |
| CDY18077 | Canola | nucleus | 43.39 | 31.91 |
| Solyc08g059700.1.1 | Tomato | nucleus | 41.74 | 29.79 |
| VIT_04s0008g05520.t01 | Wine grape | nucleus | 54.13 | 29.05 |
| PGSC0003DMT400082721 | Potato | nucleus | 42.56 | 29.01 |
| GSMUA_Achr11P... | Banana | nucleus | 44.63 | 28.27 |
| GSMUA_Achr6P20490_001 | Banana | mitochondrion | 43.39 | 27.78 |
| CDY45343 | Canola | nucleus | 2.89 | 23.33 |
Protein Annotations
| EnsemblPlants:CDX72353 | EnsemblPlantsGene:GSBRNA2T00099846001 | Gene3D:1.10.246.20 | GO:A0A078CBF9 | PANTHER:PTHR35300 | PANTHER:PTHR35300:SF1 |
| ProteinID:CDX72353 | ProteinID:CDX72353.1 | SEG:seg | UniParc:UPI0004EE3022 | MapMan:15.5.53.5.2 | : |
Description
BnaC07g43750D
Coordinates
chrLK031796:+:818279..819602
Molecular Weight (calculated)
27661.2 Da
IEP (calculated)
9.381
GRAVY (calculated)
-0.548
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRPGPRPYD CIRRAWHSDT HQPMRGLLIQ EIFRIVCEIH SQSTKKNTEW QEKLPVVVLR AEEIIYSKAN SEAEYMDMNT LLNRANDAIN TIIRLDETTE
101: TGEYLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST NLDNVISPQY QVFMKQNNFA PKTLPVMTFH SDVPVKKCPV SKYSSYPLCY SLRVPSLPVN
201: VTDSCKSNKK IRPVSVKDAT NGIAFDLLLK KWSKLSSNNN KS
101: TGEYLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST NLDNVISPQY QVFMKQNNFA PKTLPVMTFH SDVPVKKCPV SKYSSYPLCY SLRVPSLPVN
201: VTDSCKSNKK IRPVSVKDAT NGIAFDLLLK KWSKLSSNNN KS
001: MPRPGPRPYD CIRRAWHSDR HQPMRGLLIQ EIFRIVCEIH SQSTRKNTEW QEKLPVVVLR AEEIMYSKAN SEAEYMDMKT LLDRTNDAIN TIIRLDETTE
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST NLDNMLSQVF MKPNNFAPKN LAVAQENCPV SKYSAYPLCY SFRPISDSCK SKNSRPASLI
201: DATNGITFGG CECDLSLRLG PLGPPTQKRS KISSNNNN
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST NLDNMLSQVF MKPNNFAPKN LAVAQENCPV SKYSAYPLCY SFRPISDSCK SKNSRPASLI
201: DATNGITFGG CECDLSLRLG PLGPPTQKRS KISSNNNN
Arabidopsis Description
Histone acetyltransferase [Source:UniProtKB/TrEMBL;Acc:Q84JY3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.