Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH52430 | Soybean | nucleus | 89.45 | 88.81 |
| AT4G32295.1 | Thale cress | cytosol | 46.55 | 53.78 |
| Bra023956.1-P | Field mustard | cytosol | 48.36 | 51.15 |
| CDY13480 | Canola | cytosol | 48.36 | 51.15 |
| CDX72353 | Canola | cytosol | 44.36 | 50.41 |
| CDX75234 | Canola | cytosol | 46.18 | 49.8 |
| CDX68833 | Canola | nucleus | 46.55 | 49.61 |
| Bra011335.1-P | Field mustard | nucleus | 46.55 | 48.3 |
| KRH54950 | Soybean | nucleus | 42.55 | 34.72 |
| Solyc08g059700.1.1 | Tomato | nucleus | 40.36 | 32.74 |
| VIT_04s0008g05520.t01 | Wine grape | nucleus | 53.09 | 32.37 |
| PGSC0003DMT400082721 | Potato | nucleus | 39.64 | 30.7 |
| GSMUA_Achr11P... | Banana | nucleus | 42.55 | 30.63 |
| KRH20129 | Soybean | mitochondrion, nucleus | 44.73 | 30.52 |
| GSMUA_Achr6P20490_001 | Banana | mitochondrion | 41.45 | 30.16 |
| KRH03673 | Soybean | mitochondrion, nucleus | 44.73 | 29.15 |
Protein Annotations
| EMBL:ACUP02002188 | EnsemblPlants:KRH61761 | EnsemblPlantsGene:GLYMA_04G066500 | EntrezGene:100803816 | Gene3D:1.10.246.20 | PANTHER:PTHR35300 |
| PANTHER:PTHR35300:SF1 | ProteinID:KRH61761 | ProteinID:KRH61761.1 | UniParc:UPI0001BA8E8F | UniProt:I1JUC3 | MapMan:15.5.53.5.2 |
Description
hypothetical protein
Coordinates
chr4:+:5539993..5542964
Molecular Weight (calculated)
30730.2 Da
IEP (calculated)
8.558
GRAVY (calculated)
-0.726
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRPGPKPYD CVKRAWHSEI HQPIRGTLIQ EIFRVVNEIH GSSTKKNKEY QEKLPVVVLR AEEIIYSKAN SEAEYMDLTT LLERTNDAID TIIRRDEHTE
101: TGEYLRPCIE AALSLGCSLT KATRSQRNNQ RCYLSRSTEE VPKLSYGTLH NTANTKDHNN TRSQCVSENV PSASKKQCVE HQPPPKLFSV YPLYYGNNNN
201: IQLGNSQHHH GFKVSHVSVS HTGGPALVGG DGARNLLAHN LKNSSNGGSQ SFIINGDFEN PCTRKCDLSL RLGPP
101: TGEYLRPCIE AALSLGCSLT KATRSQRNNQ RCYLSRSTEE VPKLSYGTLH NTANTKDHNN TRSQCVSENV PSASKKQCVE HQPPPKLFSV YPLYYGNNNN
201: IQLGNSQHHH GFKVSHVSVS HTGGPALVGG DGARNLLAHN LKNSSNGGSQ SFIINGDFEN PCTRKCDLSL RLGPP
001: MPRPGPRPYD CIRRAWHSDR HQPMRGLLIQ EIFRIVCEIH SQSTRKNTEW QEKLPVVVLR AEEIMYSKAN SEAEYMDMKT LLDRTNDAIN TIIRLDETTE
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST NLDNMLSQVF MKPNNFAPKN LAVAQENCPV SKYSAYPLCY SFRPISDSCK SKNSRPASLI
201: DATNGITFGG CECDLSLRLG PLGPPTQKRS KISSNNNN
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST NLDNMLSQVF MKPNNFAPKN LAVAQENCPV SKYSAYPLCY SFRPISDSCK SKNSRPASLI
201: DATNGITFGG CECDLSLRLG PLGPPTQKRS KISSNNNN
Arabidopsis Description
Histone acetyltransferase [Source:UniProtKB/TrEMBL;Acc:Q84JY3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.