CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88471
KRH05342
KRH09131
KRH09132
KRH15687
KRH38603
KRH38604
KRH52306
KRH61641

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49690.1	KRH05342	AT2G24860.1	21798944
AT3G49690.1	KRH15687	AT2G24860.1	21798944
AT3G49690.1	KRH52306	AT2G24860.1	21798944
AT3G49690.1	KRH61641	AT2G24860.1	21798944
AT3G49690.1	KRG88471	AT5G62090.1	21798944
AT3G49690.1	KRH09131	AT5G62090.1	21798944
AT3G49690.1	KRH09132	AT5G62090.1	21798944
AT3G49690.1	KRH38603	AT5G62090.1	21798944
AT3G49690.1	KRH38604	AT5G62090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28317	Soybean	nucleus	93.66	93.39
CDY08749	Canola	nucleus	12.68	86.27
GSMUA_Achr4P28090_001	Banana	nucleus	35.16	53.98
GSMUA_Achr5P21840_001	Banana	nucleus	31.7	53.14
KRH04372	Soybean	nucleus	51.01	52.21
KRH58168	Soybean	nucleus	49.86	51.64
GSMUA_Achr10P...	Banana	nucleus	35.73	46.27
GSMUA_Achr5P01930_001	Banana	nucleus	37.18	45.91
AT3G49690.1	Thale cress	nucleus	40.63	45.48
GSMUA_Achr4P32240_001	Banana	nucleus	35.73	44.44
CDY18676	Canola	nucleus	39.77	43.95
CDY08162	Canola	nucleus	37.75	43.67
CDY60980	Canola	nucleus	39.48	43.63
GSMUA_Achr7P08150_001	Banana	nucleus	31.99	43.36
CDY65680	Canola	nucleus	37.46	43.33
Bra017963.1-P	Field mustard	nucleus	37.46	43.33
Bra037828.1-P	Field mustard	nucleus	38.9	42.99
TraesCS5D01G415800.1	Wheat	nucleus	38.33	42.77
TraesCS5A01G405800.1	Wheat	nucleus	38.33	42.77
HORVU5Hr1G098540.1	Barley	nucleus	38.04	42.44
TraesCS5B01G410500.1	Wheat	nucleus	38.04	42.44
Os03t0771100-01	Rice	nucleus	39.19	42.37
KRH74186	Soybean	nucleus	31.7	42.15
KRH49024	Soybean	nucleus	31.12	41.54
Zm00001d034207_P001	Maize	nucleus	37.46	41.4
KRH61462	Soybean	nucleus	41.5	41.14
KRH60169	Soybean	nucleus	29.39	41.13
KRH52158	Soybean	nucleus	42.07	41.13
KRH19894	Soybean	nucleus	36.02	40.98
KRG96025	Soybean	nucleus	38.9	40.91
PGSC0003DMT400012702	Potato	nucleus	38.62	40.73
EER90818	Sorghum	nucleus	38.33	40.67
Solyc04g077260.2.1	Tomato	nucleus	38.04	40.62
KRH67733	Soybean	nucleus	37.46	40.37
KRG88657	Soybean	nucleus	42.65	40.11
KRH32503	Soybean	nucleus	36.89	40.0
CDY45629	Canola	nucleus	42.07	39.67
KRH15479	Soybean	nucleus	41.5	39.56
Bra024419.1-P	Field mustard	nucleus	41.79	39.4
CDY08748	Canola	nucleus	41.79	39.4
CDY52538	Canola	nucleus	41.21	38.75
KRH25089	Soybean	nucleus	35.16	38.73
Bra031847.1-P	Field mustard	nucleus	41.21	38.54
CDY37840	Canola	nucleus	41.21	38.54
KRH22841	Soybean	nucleus	37.75	38.53
AT5G65790.1	Thale cress	nucleus	41.21	38.24
KRH26521	Soybean	nucleus	37.46	38.24
GSMUA_Achr6P01850_001	Banana	nucleus	36.6	38.14
Zm00001d013164_P002	Maize	nucleus	38.04	37.71
KRH18986	Soybean	nucleus	38.9	37.29
KRH30589	Soybean	nucleus	34.58	36.47
KRH02902	Soybean	nucleus	38.33	36.44
KRH15488	Soybean	nucleus	31.7	36.42
GSMUA_Achr6P31740_001	Banana	nucleus	35.16	36.42
KRH41459	Soybean	nucleus	20.75	36.36
KRH05529	Soybean	nucleus	31.7	35.6
KRH63439	Soybean	nucleus	21.33	27.82
KRH46482	Soybean	nucleus	25.65	27.38
KRG98401	Soybean	nucleus	25.65	27.3
KRG93460	Soybean	nucleus	26.8	26.96
KRH18536	Soybean	endoplasmic reticulum	26.8	24.8
KRH54481	Soybean	nucleus	21.61	22.73

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100812816	MapMan:15.5.2.1	EMBL:ACUP02000659	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G196200
GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K7K4R9	EnsemblPlants:KRH77168
ProteinID:KRH77168	ProteinID:KRH77168.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF654	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00023377DF	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:53053079..53055095

Molecular Weight (calculated)

39163.0 Da

IEP (calculated)

6.758

GRAVY (calculated)

-0.681

Length

347 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDNIIC SLYVSIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGK QRKEQQAQAQ ARRVSNNQQK QDLKRETENL VVASEVINQV PYWSSSEFSS VPMPVVNASF QHYGLNNQTS LGSMIVNKLE
201: GITFSNDHHQ QQQQPYANAC EIPSLQDQAF PTMVNQVTVV SNENNSGTYQ PSNIFQGFEN FPSDFCEPVC VNPQQMEAFN YGMESMDMTM SNGGSTNTTS
301: TESTSWGDMS SLVYSPLVSD YERCRQGIPQ DHVVAFEECK YFGMQMQ

Best Arabidopsis Sequence Match ( AT2G36890.1 )
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.