Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65680 | Canola | nucleus | 80.97 | 83.67 |
| CDY08162 | Canola | nucleus | 80.65 | 83.33 |
| Bra017963.1-P | Field mustard | nucleus | 80.32 | 83.0 |
| AT5G65790.1 | Thale cress | nucleus | 73.55 | 60.96 |
| GSMUA_Achr4P28090_001 | Banana | nucleus | 37.1 | 50.88 |
| GSMUA_Achr5P21840_001 | Banana | nucleus | 33.55 | 50.24 |
| GSMUA_Achr10P... | Banana | nucleus | 37.42 | 43.28 |
| GSMUA_Achr7P08150_001 | Banana | nucleus | 33.87 | 41.02 |
| GSMUA_Achr5P01930_001 | Banana | nucleus | 37.1 | 40.93 |
| KRH77168 | Soybean | nucleus | 45.48 | 40.63 |
| KRH28317 | Soybean | nucleus | 45.48 | 40.52 |
| GSMUA_Achr4P32240_001 | Banana | nucleus | 35.48 | 39.43 |
| Solyc04g077260.2.1 | Tomato | nucleus | 40.32 | 38.46 |
| PGSC0003DMT400012702 | Potato | nucleus | 40.65 | 38.3 |
| AT4G37780.1 | Thale cress | nucleus | 37.1 | 37.7 |
| AT5G57620.1 | Thale cress | nucleus | 39.03 | 36.34 |
| GSMUA_Achr6P01850_001 | Banana | nucleus | 37.74 | 35.14 |
| GSMUA_Achr6P31740_001 | Banana | nucleus | 37.1 | 34.33 |
| AT2G36890.2 | Thale cress | nucleus | 35.16 | 32.15 |
| AT5G23000.1 | Thale cress | nucleus | 32.58 | 30.7 |
| AT5G56110.1 | Thale cress | nucleus | 27.1 | 26.25 |
| AT3G28470.1 | Thale cress | nucleus | 26.77 | 26.18 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:824131 | UniProt:A0A178VK29 | ProteinID:ABQ85360.1 | ProteinID:ABQ85361.1 |
| ProteinID:ABQ85362.1 | ProteinID:ABQ85363.1 | ProteinID:ABQ85364.1 | ProteinID:ABQ85365.1 | ProteinID:ABQ85366.1 | ProteinID:ABQ85367.1 |
| ProteinID:ABQ85368.1 | ProteinID:ABQ85369.1 | ProteinID:ABQ85370.1 | ProteinID:ABQ85371.1 | ProteinID:ABQ85372.1 | ProteinID:ABQ85373.1 |
| ProteinID:ABQ85374.1 | ProteinID:ABQ85375.1 | ProteinID:ABQ85376.1 | ProteinID:ABQ85377.1 | ProteinID:ABQ85378.1 | ProteinID:ABQ85379.1 |
| ProteinID:ABQ85380.1 | ProteinID:ABQ85381.1 | ProteinID:ABQ85382.1 | ProteinID:ABQ85383.1 | ProteinID:AEE78577.1 | ArrayExpress:AT3G49690 |
| EnsemblPlantsGene:AT3G49690 | RefSeq:AT3G49690 | TAIR:AT3G49690 | RefSeq:AT3G49690-TAIR-G | EnsemblPlants:AT3G49690.1 | TAIR:AT3G49690.1 |
| EMBL:AY519597 | Unigene:At.742 | EMBL:BT029224 | ProteinID:CAB66907.1 | ncoils:Coil | GO:GO:0000981 |
| GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006357 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009751 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_190538.1 | ProteinID:OAP06206.1 | PFAM:PF00249 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF654 |
| UniProt:Q9M2Y9 | Symbol:RAX3 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00000A3899 |
| SEG:seg | : | : | : | : | : |
Description
RAX3RAX3 [Source:UniProtKB/TrEMBL;Acc:A0A178VK29]
Coordinates
chr3:+:18427735..18429281
Molecular Weight (calculated)
35580.1 Da
IEP (calculated)
7.311
GRAVY (calculated)
-0.696
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE NSGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEENIIC SLYLTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.