Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G49690.1 | CDY36149 | AT2G24860.1 | 21798944 |
| AT3G49690.1 | CDY45605 | AT2G24860.1 | 21798944 |
| AT3G49690.1 | CDY30691 | AT5G62090.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08162 | Canola | nucleus | 91.0 | 91.0 |
| CDY08749 | Canola | nucleus | 14.0 | 82.35 |
| AT3G49690.1 | Thale cress | nucleus | 83.67 | 80.97 |
| CDY18676 | Canola | nucleus | 64.33 | 61.47 |
| CDY60980 | Canola | nucleus | 62.67 | 59.87 |
| CDY37840 | Canola | nucleus | 70.33 | 56.87 |
| CDY52538 | Canola | nucleus | 69.67 | 56.64 |
| CDY08748 | Canola | nucleus | 69.33 | 56.52 |
| CDY45629 | Canola | nucleus | 69.0 | 56.25 |
| GSMUA_Achr4P28090_001 | Banana | nucleus | 37.33 | 49.56 |
| GSMUA_Achr5P21840_001 | Banana | nucleus | 33.67 | 48.79 |
| GSMUA_Achr10P... | Banana | nucleus | 36.33 | 40.67 |
| GSMUA_Achr5P01930_001 | Banana | nucleus | 37.67 | 40.21 |
| GSMUA_Achr7P08150_001 | Banana | nucleus | 33.33 | 39.06 |
| CDX69328 | Canola | nucleus | 38.33 | 37.7 |
| KRH28317 | Soybean | nucleus | 43.67 | 37.64 |
| GSMUA_Achr4P32240_001 | Banana | nucleus | 35.0 | 37.63 |
| KRH77168 | Soybean | nucleus | 43.33 | 37.46 |
| Solyc04g077260.2.1 | Tomato | nucleus | 39.67 | 36.62 |
| PGSC0003DMT400012702 | Potato | nucleus | 40.0 | 36.47 |
| CDY33205 | Canola | nucleus | 34.67 | 36.11 |
| CDY25898 | Canola | nucleus | 38.33 | 35.49 |
| CDX75005 | Canola | nucleus | 34.0 | 35.42 |
| CDY46743 | Canola | nucleus | 34.0 | 35.29 |
| CDY11860 | Canola | nucleus | 38.67 | 34.73 |
| CDX79698 | Canola | nucleus | 33.33 | 34.6 |
| CDX88631 | Canola | nucleus | 38.0 | 34.44 |
| CDY64987 | Canola | nucleus | 26.67 | 33.47 |
| GSMUA_Achr6P01850_001 | Banana | nucleus | 37.0 | 33.33 |
| GSMUA_Achr6P31740_001 | Banana | nucleus | 36.33 | 32.54 |
| CDY09184 | Canola | nucleus | 32.0 | 29.18 |
| CDY50326 | Canola | nucleus | 32.33 | 29.04 |
| CDY26977 | Canola | nucleus | 32.33 | 28.53 |
| CDY17391 | Canola | nucleus | 27.67 | 25.94 |
| CDY57424 | Canola | nucleus | 27.0 | 25.31 |
| CDX86430 | Canola | nucleus | 26.0 | 24.15 |
| CDX85201 | Canola | endoplasmic reticulum, vacuole | 26.0 | 11.93 |
| CDY40299 | Canola | nucleus | 2.67 | 4.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078JGP4 | UniProt:A0A078JGP4 | EnsemblPlants:CDY65680 | ProteinID:CDY65680 |
| ProteinID:CDY65680.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00047986001 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF654 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE70E2 |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g48600DBnaC08g48600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGP4]
Coordinates
chrLK034894:+:15380..16610
Molecular Weight (calculated)
34517.1 Da
IEP (calculated)
7.861
GRAVY (calculated)
-0.658
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCDKA NVKKGPWSPE EDAKLKSYIE TSGTGGNWIA LPHKIGLKRC GKSCMRWLNY LRPNIKHGGF SEAEENIICN LYLTIGSRWS IIAAQLPGRT
101: DNDIKNYWNT RLKKKLIIKQ RKELQEACIE QQEMMVMLKR QQQQIQPTFM MRQDQTMFTW PLQKLPFHHH NDGQVPTLVM NSFGDQEDIK PEIIKNMVKI
201: EDQEPERTNA FDHLYFSQLL LDPNSNYLGS GEGFSMNSIL STNTNSPLRN TSISHQRFRN FHDEAVDLFL GEAGTSADQS TIRWEDISSL VYSDSKQVVN
101: DNDIKNYWNT RLKKKLIIKQ RKELQEACIE QQEMMVMLKR QQQQIQPTFM MRQDQTMFTW PLQKLPFHHH NDGQVPTLVM NSFGDQEDIK PEIIKNMVKI
201: EDQEPERTNA FDHLYFSQLL LDPNSNYLGS GEGFSMNSIL STNTNSPLRN TSISHQRFRN FHDEAVDLFL GEAGTSADQS TIRWEDISSL VYSDSKQVVN
001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE NSGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEENIIC SLYLTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF
Arabidopsis Description
RAX3RAX3 [Source:UniProtKB/TrEMBL;Acc:A0A178VK29]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.