CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79140
CDX80127
CDX82926
CDX90930
CDX91293
CDX97278
CDX98736
CDY08148
CDY08748
CDY08749
CDY18011
CDY18676
CDY21898
CDY22062
CDY24170
CDY36943
CDY37840
CDY45629
CDY52538
CDY53013
CDY60980

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24860.1	CDX80127	AT2G47700.1	21798944
AT2G24860.1	CDY53013	AT2G47700.1	21798944
AT2G24860.1	CDY24170	AT3G47620.1	21798944
AT2G24860.1	CDY36943	AT3G47620.1	21798944
AT2G24860.1	CDY08148	AT3G49580.1	21798944
AT2G24860.1	CDX90930	AT4G02590.1	21798944
AT2G24860.1	CDX91293	AT4G02590.1	21798944
AT2G24860.1	CDX97278	AT4G02590.1	21798944
AT2G24860.1	CDY18011	AT4G02590.1	21798944
AT2G24860.1	CDY21898	AT4G02590.1	21798944
AT2G24860.1	CDY22062	AT4G02590.1	21798944
AT2G24860.1	CDX79140	AT4G22250.1	21798944
AT2G24860.1	CDX82926	AT4G22250.1	21798944
AT2G24860.1	CDX98736	AT4G22250.1	21798944
AT2G24860.1	CDY08748	AT5G65790.1	21798944
AT2G24860.1	CDY08749	AT5G65790.1	21798944
AT2G24860.1	CDY18676	AT5G65790.1	21798944
AT2G24860.1	CDY37840	AT5G65790.1	21798944
AT2G24860.1	CDY45629	AT5G65790.1	21798944
AT2G24860.1	CDY52538	AT5G65790.1	21798944
AT2G24860.1	CDY60980	AT5G65790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45605	Canola	plastid	96.62	96.62
AT2G24860.1	Thale cress	plastid	82.43	84.72
VIT_04s0008g06970.t01	Wine grape	plastid	62.84	63.7
KRH15687	Soybean	plastid	52.03	62.6
GSMUA_Achr6P01920_001	Banana	plastid	62.84	61.18
KXG35655	Sorghum	plastid	58.11	58.11
KRH61641	Soybean	plastid	54.05	57.55
Os09t0423700-01	Rice	plastid	57.43	56.67
Solyc08g006620.2.1	Tomato	cytosol	57.43	56.29
TraesCS5B01G220500.1	Wheat	plastid	54.73	54.73
TraesCS5D01G229500.1	Wheat	plastid	54.73	54.73
KRH52306	Soybean	plastid	54.73	49.09
KRH05342	Soybean	extracellular	55.41	46.33
TraesCS5A01G221700.1	Wheat	plastid	54.73	44.02
Zm00001d020538_P001	Maize	cytosol	43.24	42.11
HORVU5Hr1G064120.1	Barley	cytosol, nucleus	55.41	40.2

Protein Annotations

EnsemblPlants:CDY36149	EnsemblPlantsGene:GSBRNA2T00059998001	GO:A0A078HFF6	InterPro:HSP_DnaJ_Cys-rich_dom_sf	PANTHER:PTHR15852	PANTHER:PTHR15852:SF13
ProteinID:CDY36149	ProteinID:CDY36149.1	SUPFAM:SSF57938	UniParc:UPI0004EE7B9E	UniProt:A0A078HFF6	MapMan:35.2

Description

BnaC04g37450DBnaC04g37450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFF6]

Coordinates

chrLK032368:+:19808..20868

Molecular Weight (calculated)

15977.4 Da

IEP (calculated)

9.044

GRAVY (calculated)

-0.093

Length

148 amino acids

Sequence
(BLAST)

001: MAICMCCESR IVPKSIMNPW ISPRRTKLGF VAISPTSTTI RRSPATVRAS AVDSPESSSN FAKRVEQAWL ISQQPRPVGC SSCNSKGHVE CKWCAGTGFF
101: ILGDNMLCQV PSRNTSCVIC SGKGSACCSD CKGTGFRAKW LEKPPVPL

Best Arabidopsis Sequence Match ( AT2G24860.1 )
(BLAST)

001: MTICMCCDSH LVAKSILNPW NSPRITKLGF VPVVRRFPAT TTVKASAVDS PESSSNFAKR MDQAWIISQQ PSPVGCSSCN SKGHVECKWC AGTGFFILGD
101: NMLCQVPSRN TSCVICSGQG SASCSDCKGT GFRAKWLEKP PVPT

Arabidopsis Description

At2g24860/F27C12.22 [Source:UniProtKB/TrEMBL;Acc:Q9SK46]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.