Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82926 | Canola | nucleus | 72.6 | 75.12 |
| Bra013603.1-P | Field mustard | cytosol | 63.46 | 65.02 |
| AT4G22250.1 | Thale cress | cytosol | 62.98 | 61.22 |
| CDX98736 | Canola | nucleus | 58.65 | 60.7 |
| CDY21289 | Canola | nucleus | 52.4 | 53.96 |
| CDX90849 | Canola | nucleus | 52.4 | 53.96 |
| Solyc02g081180.1.1 | Tomato | nucleus | 38.94 | 39.9 |
| PGSC0003DMT400043086 | Potato | nucleus | 39.42 | 39.42 |
| GSMUA_Achr1P18240_001 | Banana | nucleus | 32.21 | 38.07 |
| GSMUA_Achr3P12970_001 | Banana | cytosol | 31.25 | 37.57 |
| CDY08650 | Canola | cytosol | 34.13 | 33.65 |
| CDY32036 | Canola | cytosol | 33.65 | 33.18 |
| Solyc03g031830.1.1 | Tomato | nucleus | 38.46 | 32.65 |
| PGSC0003DMT400061842 | Potato | mitochondrion | 36.06 | 31.12 |
| CDY69745 | Canola | cytosol | 14.42 | 12.24 |
| CDX77379 | Canola | cytosol | 13.46 | 11.2 |
| CDY05318 | Canola | nucleus | 9.13 | 8.96 |
| CDY24647 | Canola | nucleus | 7.69 | 7.51 |
| CDX74062 | Canola | cytosol, nucleus, plastid | 11.54 | 7.1 |
Protein Annotations
| EnsemblPlants:CDX79140 | EnsemblPlantsGene:GSBRNA2T00131692001 | Gene3D:3.30.40.10 | GO:A0A078CQN1 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | PFAM:PF13920 | PFscan:PS50089 |
| ProteinID:CDX79140 | ProteinID:CDX79140.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EED2BD |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA01g12070D
Coordinates
chrLK031816:-:2003363..2003989
Molecular Weight (calculated)
23220.6 Da
IEP (calculated)
7.178
GRAVY (calculated)
-0.425
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDLDLGTTQ RMTTETHRTT TFFDLLRRQM SVADRTRRKR TLRERLRFKC IACCGPTINN TTTSATLHSP TSREDEIEDF QSEIQFVPGS DAGSGSGVNL
101: ATALEAERYN RGEPAVDMTP RRVSLMRLLD ETAERVDNDG RETEISTASL GTLTGNDSVC CVCMGRKKGA AFIPCGHTFC RVCSRELWLN RGSCPLCNRP
201: IIEILDIF
101: ATALEAERYN RGEPAVDMTP RRVSLMRLLD ETAERVDNDG RETEISTASL GTLTGNDSVC CVCMGRKKGA AFIPCGHTFC RVCSRELWLN RGSCPLCNRP
201: IIEILDIF
001: MMSELDLGTS QRMTETHRTT TTFLDLLRRQ MSGHDLTRRK RTLKERLRFK CIGCCGPTWN LRLTNNTTLH SPTSRDDEIE ELQIETGLVL ESDHGSGTGM
101: NLATALEAER YNRGESTEAE ADMTPRRVSL MRLLEETAEK IVDDDGKETE ILTASIGTLT GNDSVCCVCM GRKKGAAFIP CGHTFCRVCS RELWLNRGSC
201: PLCNRPIIEI LDIF
101: NLATALEAER YNRGESTEAE ADMTPRRVSL MRLLEETAEK IVDDDGKETE ILTASIGTLT GNDSVCCVCM GRKKGAAFIP CGHTFCRVCS RELWLNRGSC
201: PLCNRPIIEI LDIF
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GXD8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.