CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70985
CDX88809
CDX89437
CDY03368
CDY11941
CDY20736
CDY36789
CDY49390
CDY66434
CDY66435
CDY67858

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02140.1	CDX89437	AT4G25200.1	21798944
AT1G02140.1	CDY03368	AT4G25200.1	21798944
AT1G02140.1	CDX70985	AT5G22120.1	21798944
AT1G02140.1	CDX88809	AT5G22120.1	21798944
AT1G02140.1	CDY11941	AT5G56290.1	21798944
AT1G02140.1	CDY20736	AT5G56290.1	21798944
AT1G02140.1	CDY36789	AT5G56290.1	21798944
AT1G02140.1	CDY49390	AT5G56290.1	21798944
AT1G02140.1	CDY66434	AT5G56290.1	21798944
AT1G02140.1	CDY66435	AT5G56290.1	21798944
AT1G02140.1	CDY67858	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90077	Canola	nucleus	97.33	98.65
CDY15128	Canola	nucleus	97.33	93.59
AT1G02140.1	Thale cress	nucleus	92.67	92.67
KRH48832	Soybean	nucleus	88.0	87.42
VIT_16s0013g00610.t01	Wine grape	nucleus	87.33	86.75
KRH11252	Soybean	nucleus	86.0	85.43
Solyc03g093680.2.1	Tomato	nucleus	82.67	82.12
GSMUA_Achr11P...	Banana	nucleus	56.67	81.73
GSMUA_Achr11P...	Banana	nucleus	56.0	80.77
Os12t0287200-01	Rice	nucleus	85.33	80.0
Zm00001d049723_P001	Maize	extracellular	85.33	79.5
EES13219	Sorghum	nucleus	84.0	79.25
TraesCS7A01G323400.1	Wheat	nucleus	84.67	77.91
TraesCS7B01G224300.1	Wheat	nucleus	84.67	77.91
TraesCS7D01G320000.1	Wheat	nucleus	84.67	77.91
HORVU7Hr1G077420.4	Barley	nucleus	84.67	77.44
EER99060	Sorghum	nucleus	78.0	73.58
Os08t0107900-01	Rice	nucleus	76.67	70.55
Zm00001d035019_P001	Maize	nucleus	76.67	65.71
KRH66476	Soybean	nucleus	78.0	60.0
GSMUA_Achr11P...	Banana	mitochondrion	48.0	57.6
PGSC0003DMT400054151	Potato	nucleus	79.33	52.65
Bra032668.1-P	Field mustard	cytosol	89.33	50.38

Protein Annotations

EnsemblPlants:CDY38056	EnsemblPlantsGene:GSBRNA2T00065126001	Gene3D:3.30.1560.10	GO:A0A078HKB3	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:IPR036605	InterPro:Mago_nashi	InterPro:Mago_nashi_sf	PANTHER:PTHR12638
PFAM:PF02792	ProteinID:CDY38056	ProteinID:CDY38056.1	SUPFAM:SSF89817	UniParc:UPI0001BA9173	UniProt:A0A078HKB3
MapMan:17.3.1.1.2	:	:	:	:	:

Description

BnaCnng09170DBnaCnng09170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKB3]

Coordinates

chrLK032414:-:300220..301347

Molecular Weight (calculated)

17552.0 Da

IEP (calculated)

5.695

GRAVY (calculated)

-0.420

Length

150 amino acids

Sequence
(BLAST)

001: MAAEEGNEFY LRYYVGHKGK FGHEFLEFEF RPDGKLRYAN NSNYKNDTMI RKEVFLTPAV LKECKRIVSE SEIMKEDDFK WPEPDRVGRQ ELEIVMGNEH
101: ISFATSKIGS LVDVQSSDDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI

Best Arabidopsis Sequence Match ( AT1G02140.1 )
(BLAST)

001: MAAEEATEFY LRYYVGHKGK FGHEFLEFEF REDGKLRYAN NSNYKNDTII RKEVFLTPAV LKECKRIVSE SEILKEDDNN WPEPDRVGKQ ELEIVLGNEH
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI

Arabidopsis Description

MEE63MEE63 [Source:UniProtKB/TrEMBL;Acc:A0A178WA48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.