CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89430
EER89431
EES15431
EES19096
KXG19616
KXG34199
OQU75612
OQU75930
OQU76071
OQU85385

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02140.1	EER89430	AT4G25200.1	21798944
AT1G02140.1	EER89431	AT4G25200.1	21798944
AT1G02140.1	KXG19616	AT4G25200.1	21798944
AT1G02140.1	OQU75612	AT4G25200.1	21798944
AT1G02140.1	OQU75930	AT4G25200.1	21798944
AT1G02140.1	OQU76071	AT4G25200.1	21798944
AT1G02140.1	OQU85385	AT4G25200.1	21798944
AT1G02140.1	EES19096	AT5G22120.1	21798944
AT1G02140.1	KXG34199	AT5G22120.1	21798944
AT1G02140.1	EES15431	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13219	Sorghum	nucleus	87.42	87.42
Os12t0287200-01	Rice	nucleus	83.65	83.12
GSMUA_Achr11P...	Banana	nucleus	54.09	82.69
GSMUA_Achr11P...	Banana	nucleus	53.46	81.73
VIT_16s0013g00610.t01	Wine grape	nucleus	77.36	81.46
TraesCS7D01G320000.1	Wheat	nucleus	83.02	80.98
TraesCS7B01G224300.1	Wheat	nucleus	83.02	80.98
TraesCS7A01G323400.1	Wheat	nucleus	83.02	80.98
KRH11252	Soybean	nucleus	76.1	80.13
HORVU7Hr1G077420.4	Barley	nucleus	82.39	79.88
KRH48832	Soybean	nucleus	75.47	79.47
CDX90077	Canola	nucleus	73.58	79.05
CDY38056	Canola	nucleus	73.58	78.0
CDY15128	Canola	nucleus	73.58	75.0
Solyc03g093680.2.1	Tomato	nucleus	71.07	74.83
AT1G02140.1	Thale cress	nucleus	70.44	74.67
Bra033217.1-P	Field mustard	nucleus	47.8	74.51
Os08t0107900-01	Rice	nucleus	72.33	70.55
KRH66476	Soybean	nucleus	67.92	55.38
GSMUA_Achr11P...	Banana	mitochondrion	43.4	55.2
PGSC0003DMT400054151	Potato	nucleus	67.92	47.79
Bra032668.1-P	Field mustard	cytosol	67.3	40.23

Protein Annotations

MapMan:17.3.1.1.2	Gene3D:3.30.1560.10	EntrezGene:8063753	UniProt:C5X3P5	EnsemblPlants:EER99060	ProteinID:EER99060
ProteinID:EER99060.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0035145	InterPro:IPR036605
InterPro:Mago_nashi	InterPro:Mago_nashi_sf	PFAM:PF02792	PANTHER:PTHR12638	PANTHER:PTHR12638:SF1	EnsemblPlantsGene:SORBI_3002G238800
SUPFAM:SSF89817	UniParc:UPI0001A8420F	RefSeq:XP_002462539.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:62906925..62909404

Molecular Weight (calculated)

18668.2 Da

IEP (calculated)

8.919

GRAVY (calculated)

-0.633

Length

159 amino acids

Sequence
(BLAST)

001: MSARGGENRR GGDDEFYLRY YVGHKGKFGH EFLEFEFRPD GKLRYANNSN YKNDTMIRKE VFVSRSALRE ARRIIQQSDI MREDDRNWPE PNYIGRQELE
101: IVMGNEHISF TTSKIGSLVD VVGSRDPDGL RIFYYLVQDL KCFVFSLISL HFKVKPIQS

Best Arabidopsis Sequence Match ( AT1G02140.1 )
(BLAST)

001: MAAEEATEFY LRYYVGHKGK FGHEFLEFEF REDGKLRYAN NSNYKNDTII RKEVFLTPAV LKECKRIVSE SEILKEDDNN WPEPDRVGKQ ELEIVLGNEH
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI

Arabidopsis Description

MEE63MEE63 [Source:UniProtKB/TrEMBL;Acc:A0A178WA48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.