Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 5
- nucleus 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr10P... | |
| GSMUA_Achr7P20310_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G02140.1 | GSMUA_Achr10P... | AT4G25200.1 | 21798944 |
| AT1G02140.1 | GSMUA_Achr10P... | AT5G22120.1 | 21798944 |
| AT1G02140.1 | GSMUA_Achr7P20310_001 | AT5G56290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 68.8 | 82.69 |
| GSMUA_Achr11P... | Banana | nucleus | 68.0 | 81.73 |
| Bra033217.1-P | Field mustard | nucleus | 56.8 | 69.61 |
| VIT_16s0013g00610.t01 | Wine grape | nucleus | 62.4 | 51.66 |
| KRH11252 | Soybean | nucleus | 62.4 | 51.66 |
| KRH48832 | Soybean | nucleus | 61.6 | 50.99 |
| CDX90077 | Canola | nucleus | 57.6 | 48.65 |
| Os12t0287200-01 | Rice | nucleus | 61.6 | 48.12 |
| CDY38056 | Canola | nucleus | 57.6 | 48.0 |
| Solyc03g093680.2.1 | Tomato | nucleus | 56.8 | 47.02 |
| AT1G02140.1 | Thale cress | nucleus | 56.0 | 46.67 |
| TraesCS7D01G320000.1 | Wheat | nucleus | 60.8 | 46.63 |
| TraesCS7B01G224300.1 | Wheat | nucleus | 60.8 | 46.63 |
| TraesCS7A01G323400.1 | Wheat | nucleus | 60.8 | 46.63 |
| EES13219 | Sorghum | nucleus | 59.2 | 46.54 |
| HORVU7Hr1G077420.4 | Barley | nucleus | 60.8 | 46.34 |
| CDY15128 | Canola | nucleus | 57.6 | 46.15 |
| Zm00001d049723_P001 | Maize | extracellular | 59.2 | 45.96 |
| EER99060 | Sorghum | nucleus | 55.2 | 43.4 |
| Os08t0107900-01 | Rice | nucleus | 52.0 | 39.88 |
| Zm00001d035019_P001 | Maize | nucleus | 51.2 | 36.57 |
| KRH66476 | Soybean | nucleus | 55.2 | 35.38 |
| PGSC0003DMT400054151 | Potato | nucleus | 52.0 | 28.76 |
| Bra032668.1-P | Field mustard | cytosol | 52.8 | 24.81 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P03620_001 | EnsemblPlants:GSMUA_Achr11T03620_001 | EnsemblPlantsGene:GSMUA_Achr11G03620_001 | Gene3D:3.30.1560.10 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR036605 | InterPro:Mago_nashi | InterPro:Mago_nashi_sf | PANTHER:PTHR12638 |
| PFAM:PF02792 | SEG:seg | SUPFAM:SSF89817 | UniParc:UPI000295178D | UniProt:M0RP42 | MapMan:17.3.1.1.2 |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G03620_001]
Coordinates
chr11:-:2611001..2613568
Molecular Weight (calculated)
14299.4 Da
IEP (calculated)
9.822
GRAVY (calculated)
-0.220
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMAMASRMS STCVTRWSTR ASLGTSSWRG VRVPAVLREC RRIIADSEIM KEDDNNWPPP DRVGRQEMEI VMNNEHISFT TSKIRSLVDV QGSQDPKGLR
101: VFYYLVRCFV VSLISLQFKI KPIES
101: VFYYLVRCFV VSLISLQFKI KPIES
001: MAAEEATEFY LRYYVGHKGK FGHEFLEFEF REDGKLRYAN NSNYKNDTII RKEVFLTPAV LKECKRIVSE SEILKEDDNN WPEPDRVGKQ ELEIVLGNEH
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI
Arabidopsis Description
MEE63MEE63 [Source:UniProtKB/TrEMBL;Acc:A0A178WA48]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.