Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90077 | Canola | nucleus | 94.23 | 99.32 |
| CDY38056 | Canola | nucleus | 93.59 | 97.33 |
| AT1G02140.1 | Thale cress | nucleus | 87.82 | 91.33 |
| KRH48832 | Soybean | nucleus | 84.62 | 87.42 |
| VIT_16s0013g00610.t01 | Wine grape | nucleus | 83.97 | 86.75 |
| KRH11252 | Soybean | nucleus | 82.69 | 85.43 |
| Solyc03g093680.2.1 | Tomato | nucleus | 80.13 | 82.78 |
| GSMUA_Achr11P... | Banana | nucleus | 54.49 | 81.73 |
| GSMUA_Achr11P... | Banana | nucleus | 53.85 | 80.77 |
| Os12t0287200-01 | Rice | nucleus | 81.41 | 79.38 |
| EES13219 | Sorghum | nucleus | 80.77 | 79.25 |
| Zm00001d049723_P001 | Maize | extracellular | 81.41 | 78.88 |
| TraesCS7A01G323400.1 | Wheat | nucleus | 80.77 | 77.3 |
| TraesCS7B01G224300.1 | Wheat | nucleus | 80.77 | 77.3 |
| TraesCS7D01G320000.1 | Wheat | nucleus | 80.77 | 77.3 |
| HORVU7Hr1G077420.4 | Barley | nucleus | 80.77 | 76.83 |
| EER99060 | Sorghum | nucleus | 75.0 | 73.58 |
| Os08t0107900-01 | Rice | nucleus | 73.72 | 70.55 |
| Zm00001d035019_P001 | Maize | nucleus | 73.08 | 65.14 |
| KRH66476 | Soybean | nucleus | 75.0 | 60.0 |
| GSMUA_Achr11P... | Banana | mitochondrion | 46.15 | 57.6 |
| PGSC0003DMT400054151 | Potato | nucleus | 76.92 | 53.1 |
| Bra032668.1-P | Field mustard | cytosol | 86.54 | 50.75 |
Protein Annotations
| EnsemblPlants:CDY15128 | EnsemblPlantsGene:GSBRNA2T00085296001 | Gene3D:3.30.1560.10 | GO:A0A078FS81 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR036605 | InterPro:Mago_nashi | InterPro:Mago_nashi_sf | PANTHER:PTHR12638 |
| PFAM:PF02792 | ProteinID:CDY15128 | ProteinID:CDY15128.1 | SUPFAM:SSF89817 | UniParc:UPI0004EE5FED | UniProt:A0A078FS81 |
| MapMan:17.3.1.1.2 | : | : | : | : | : |
Description
BnaC05g00070DBnaC05g00070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FS81]
Coordinates
chrLK032052:+:16485..17796
Molecular Weight (calculated)
18372.1 Da
IEP (calculated)
6.126
GRAVY (calculated)
-0.330
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEANEFYLR YYVGHKGKFG HEFLEFEFRP DGKLRYANNS NYKNDTMIRK EVFLTPAVLK ECKRIVSESE SIRVLCIYIM KEDDFKWPEP DRVGRQELEI
101: VMGNEHISFA TSKIGSLVDV QSSDDPEGLR IFYYLVQDLK CLVFSLISLH FKIKPI
101: VMGNEHISFA TSKIGSLVDV QSSDDPEGLR IFYYLVQDLK CLVFSLISLH FKIKPI
001: MAAEEATEFY LRYYVGHKGK FGHEFLEFEF REDGKLRYAN NSNYKNDTII RKEVFLTPAV LKECKRIVSE SEILKEDDNN WPEPDRVGKQ ELEIVLGNEH
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI
Arabidopsis Description
MEE63MEE63 [Source:UniProtKB/TrEMBL;Acc:A0A178WA48]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.