CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79533
CDX80638
CDX84682
CDX86151
CDX88648
CDY02778
CDY11841
CDY17182
CDY19499
CDY28975
CDY32739
CDY32958
CDY36555
CDY39641
CDY40577
CDY43605
CDY51271
CDY57462

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56290.1	CDX79533	AT2G33520.1	21798944
AT5G56290.1	CDX84682	AT2G33520.1	21798944
AT5G56290.1	CDY17182	AT2G33520.1	21798944
AT5G56290.1	CDY19499	AT2G33520.1	21798944
AT5G56290.1	CDY28975	AT3G01910.1	21798944
AT5G56290.1	CDY36555	AT3G01910.1	21798944
AT5G56290.1	CDY39641	AT3G01910.1	21798944
AT5G56290.1	CDY40577	AT3G01910.1	21798944
AT5G56290.1	CDX80638	AT5G27600.1	16256065
AT5G56290.1	CDX86151	AT5G27600.1	16256065
AT5G56290.1	CDY32958	AT5G43280.1	24879895
AT5G56290.1	CDY43605	AT5G43280.1	24879895
AT5G56290.1	CDX88648	AT5G57910.1	21798944
AT5G56290.1	CDY02778	AT5G57910.1	21798944
AT5G56290.1	CDY11841	AT5G57910.1	21798944
AT5G56290.1	CDY32739	AT5G57910.1	21798944
AT5G56290.1	CDY51271	AT5G57910.1	21798944
AT5G56290.1	CDY57462	AT5G57910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66435	Canola	cytosol	39.37	75.0
CDY20736	Canola	extracellular	13.12	45.31
CDY49390	Canola	plastid	97.29	30.85
AT5G56290.1	Thale cress	plastid	94.57	28.71
CDY11941	Canola	plastid	94.57	28.63
CDY36789	Canola	plastid	94.57	27.68
Bra002826.1-P	Field mustard	plastid	90.5	26.25
Os08t0500100-02	Rice	cytosol	81.0	24.32
GSMUA_Achr7P20310_001	Banana	plastid	82.81	24.14
EES15431	Sorghum	plastid	79.19	23.84
Zm00001d031327_P009	Maize	plastid	79.19	23.65
TraesCS7A01G241500.5	Wheat	cytosol, plastid	79.64	23.53
TraesCS7B01G137000.2	Wheat	cytosol, plastid	79.64	23.53
TraesCS7D01G240500.3	Wheat	cytosol, plastid	79.64	23.5
HORVU7Hr1G049220.10	Barley	plastid	79.19	23.4
CDY66434	Canola	cytosol, nucleus, plastid	27.6	21.55
Zm00001d052851_P002	Maize	plastid	71.49	20.55
TraesCS6A01G105000.1	Wheat	plastid	56.56	17.63
CDY69423	Canola	plastid	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:23.4.1.1.1	UniProt:A0A078JK20	EnsemblPlants:CDY67858	ProteinID:CDY67858	ProteinID:CDY67858.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00067572001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFAM:PF00515	PFAM:PF13181	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR10130
PANTHER:PTHR10130:SF0	InterPro:PTS1R_family	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI0004EE3620	:	:	:

Description

BnaCnng56710DBnaCnng56710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JK20]

Coordinates

chrLK036586:-:7089..8388

Molecular Weight (calculated)

24835.5 Da

IEP (calculated)

5.268

GRAVY (calculated)

-0.253

Length

221 amino acids

Sequence
(BLAST)

001: MQAIAAMMRA HEADPSNLEV LLALGVSHTN ELEQATALKY LYGWLRKHPK YGAIAPPELA DSLYHADIAR LFTEASQMNP EDADVHIVLG VLFNLSREFD
101: RAMTSFQTAL QLKPNDYSLW NKLGATQANS VQSADAISAY QQALDLKPNY VRAWANMGIS YANQGLYQES IPYYVRALSM NPKADNAWQY LRISLSCASR
201: QDMIEACESR NLDLLQKEFP L

Best Arabidopsis Sequence Match ( AT5G56290.1 )
(BLAST)

001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAN RSGPRPQFYS EDQQIRSLPG SELDQPLLQP GAQGSEFFRG FRSVDQNGLG
101: AAWDEVQQGG PMPPMGPMFE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HVPGRFRELD DYWNESQAVV KPNLHPADNW AAEFNQHGMD HGGPDSWVQS FEQQHGVNGW ATEFEQGQSQ LMSSQMRSMD MQNIAAMEQT
301: RKLAHTLSQD GNPKFQNSRF LQFVSKMSRG ELIIDENQVK QASAPGEWAT EYEQQYLGPP SWADQFANEK LSHGPEQWAD EFASGRGQQE TAEDQWVNEF
401: SKLNVDDWID EFAEGPVGDS SADAWANAYD EFLNEKNAGK QTSGVYVFSD MNPYVGHPEP MKEGQELFRK GLLSEAALAL EAEVMKNPEN AEGWRLLGVT
501: HAENDDDQQA IAAMMRAQEA DPTNLEVLLA LGVSHTNELE QATALKYLYG WLRNHPKYGA IAPPELADSL YHADIARLFN EASQLNPEDA DVHIVLGVLY
601: NLSREFDRAI TSFQTALQLK PNDYSLWNKL GATQANSVQS ADAISAYQQA LDLKPNYVRA WANMGISYAN QGMYKESIPY YVRALAMNPK ADNAWQYLRL
701: SLSCASRQDM IEACESRNLD LLQKEFPL

Arabidopsis Description

PEX5Peroxisome biogenesis protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMA3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.