Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX86151 | Canola | peroxisome | 98.43 | 98.43 |
AT5G27600.1 | Thale cress | peroxisome, plastid | 86.7 | 86.57 |
Solyc01g099100.2.1 | Tomato | plastid | 74.25 | 74.57 |
VIT_14s0128g00720.t01 | Wine grape | peroxisome | 67.1 | 74.09 |
CDX74115 | Canola | plastid | 73.39 | 73.71 |
CDY49993 | Canola | mitochondrion | 73.1 | 73.42 |
CDY27725 | Canola | plastid | 71.53 | 72.78 |
CDY05217 | Canola | plastid | 71.53 | 72.78 |
EES15543 | Sorghum | peroxisome | 69.96 | 71.7 |
Zm00001d023238_P002 | Maize | plasma membrane | 70.53 | 71.35 |
CDX92843 | Canola | peroxisome | 21.75 | 71.03 |
Os12t0143900-01 | Rice | peroxisome | 71.39 | 70.58 |
Zm00001d052485_P001 | Maize | mitochondrion, peroxisome | 70.1 | 70.4 |
TraesCS4A01G184900.2 | Wheat | peroxisome | 69.81 | 70.11 |
TraesCS5B01G131800.3 | Wheat | peroxisome | 70.39 | 70.09 |
TraesCS4D01G128700.3 | Wheat | mitochondrion | 69.38 | 69.68 |
TraesCS5A01G133200.2 | Wheat | peroxisome | 69.96 | 69.66 |
KXG27718 | Sorghum | peroxisome | 69.38 | 69.58 |
TraesCS4B01G133700.3 | Wheat | peroxisome | 69.24 | 69.54 |
TraesCS5D01G141300.1 | Wheat | peroxisome | 69.67 | 69.37 |
Os11t0147000-01 | Rice | peroxisome | 70.24 | 69.25 |
HORVU5Hr1G040740.17 | Barley | peroxisome | 68.24 | 66.71 |
HORVU4Hr1G025820.9 | Barley | peroxisome, plastid | 68.38 | 63.73 |
PGSC0003DMT400063438 | Potato | peroxisome | 7.73 | 58.7 |
CDY65251 | Canola | peroxisome | 18.17 | 54.27 |
CDY68722 | Canola | peroxisome | 16.6 | 40.85 |
CDX80092 | Canola | mitochondrion, peroxisome | 17.02 | 40.61 |
CDY47618 | Canola | peroxisome | 36.77 | 38.53 |
CDY03515 | Canola | peroxisome | 36.62 | 38.38 |
CDX86825 | Canola | peroxisome | 36.19 | 37.99 |
CDY69216 | Canola | peroxisome | 22.32 | 37.86 |
CDY29350 | Canola | peroxisome | 35.34 | 37.09 |
CDY59237 | Canola | peroxisome | 35.05 | 36.79 |
CDY37793 | Canola | peroxisome | 22.6 | 36.66 |
CDX80093 | Canola | peroxisome | 22.6 | 36.66 |
CDX94232 | Canola | peroxisome | 34.19 | 36.16 |
CDY25270 | Canola | peroxisome | 33.91 | 35.96 |
CDY51419 | Canola | peroxisome | 33.91 | 35.91 |
CDY27501 | Canola | peroxisome | 33.48 | 35.45 |
CDY40856 | Canola | peroxisome | 36.34 | 34.65 |
CDY71490 | Canola | extracellular, peroxisome | 7.44 | 33.77 |
CDX95713 | Canola | peroxisome | 31.33 | 31.97 |
CDY72011 | Canola | peroxisome | 9.59 | 31.75 |
CDX79212 | Canola | endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole | 31.04 | 31.31 |
CDY46530 | Canola | peroxisome | 35.19 | 31.3 |
CDX68052 | Canola | endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole | 30.9 | 31.17 |
CDY66248 | Canola | peroxisome | 30.62 | 29.68 |
CDY15082 | Canola | peroxisome | 30.19 | 29.47 |
CDY64879 | Canola | peroxisome | 35.34 | 25.73 |
CDY01190 | Canola | plastid | 23.46 | 22.81 |
CDY12731 | Canola | plastid | 23.61 | 22.76 |
CDY67321 | Canola | plastid | 23.03 | 22.42 |
CDY53212 | Canola | plastid | 22.89 | 21.39 |
Protein Annotations
EnsemblPlants:CDX80638 | EnsemblPlantsGene:GSBRNA2T00133777001 | Gene3D:2.30.38.10 | Gene3D:3.40.50.12780 | Gene3D:3.40.50.980 | GO:A0A078CZW5 |
GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | InterPro:AMP-binding_CS | InterPro:AMP-dep_Synth/Lig |
PANTHER:PTHR43272 | PANTHER:PTHR43272:SF17 | PFAM:PF00501 | ProteinID:CDX80638 | ProteinID:CDX80638.1 | ScanProsite:PS00455 |
SUPFAM:SSF56801 | UniParc:UPI0004EE2209 | MapMan:5.7.3.1 | : | : | : |
Description
BnaC07g28060D
Coordinates
chrLK031821:-:1782122..1786437
Molecular Weight (calculated)
77211.5 Da
IEP (calculated)
6.741
GRAVY (calculated)
-0.163
Length
699 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFSSPAQRR LQTLRSHLDS SQADDQPSLF LNATASAAPF SNEDSYSVVL PEKLDTGIWN VHRSAKSPTK LFSRFPDHPE IGTLHDNFVH AVETYPDNKY
101: LGTRARPDGT IGEYTWMTYA ETASARQAIG SGLLYNGINH GACVGLYFIN RPEWLVVDHA CAAYSFISVP LYDTLGPDAV KFVVNHATLQ AIFCVPQTLN
201: TLLSFLSEIP TIRLVVVVGG ADENLPSLPP GSGVKIVSYQ KLLSQGRSSV HPFSPPKPED IATICYTSGT TGTPKGAMLS HENLISNVAG SSLSINFLPD
301: DIYISYLPLA HIYERSNQIM GVYGGVSIGF YQGDIMKLMD DLAVLRPTVF CSVPRLYNRV YDGITSAVKS SGVTKRRLFQ LAYNSKKKAI LNGRRSPSPL
401: WDKLVFNKIK EKLGGRVRFM GSGASPLSPD VMDFLRVCFG CSVREGYGMT ETSCVISSMD EGDNLSGHVG SPNPACEVKL VDVPEMNYTS EDQPYPRGEI
501: CVRGPIIFKG YYKDEEQTKE IMDEDGWLHT GDIGLWLPGG RLKIIDRKKN IFKLAQGEYI APEKIENVYT KCRFVSQCFI HGDSFNSSLV AIVAVDPDVL
601: KDWAASEDIK YENLGQLCKD PKVRKAVLAE MDIVGREAQL RGFEFAKAVT LVPEPFTLEN GLLTPTFKVK RPQAKAYFAE AISKMYAEIA AWDPMPSKL
101: LGTRARPDGT IGEYTWMTYA ETASARQAIG SGLLYNGINH GACVGLYFIN RPEWLVVDHA CAAYSFISVP LYDTLGPDAV KFVVNHATLQ AIFCVPQTLN
201: TLLSFLSEIP TIRLVVVVGG ADENLPSLPP GSGVKIVSYQ KLLSQGRSSV HPFSPPKPED IATICYTSGT TGTPKGAMLS HENLISNVAG SSLSINFLPD
301: DIYISYLPLA HIYERSNQIM GVYGGVSIGF YQGDIMKLMD DLAVLRPTVF CSVPRLYNRV YDGITSAVKS SGVTKRRLFQ LAYNSKKKAI LNGRRSPSPL
401: WDKLVFNKIK EKLGGRVRFM GSGASPLSPD VMDFLRVCFG CSVREGYGMT ETSCVISSMD EGDNLSGHVG SPNPACEVKL VDVPEMNYTS EDQPYPRGEI
501: CVRGPIIFKG YYKDEEQTKE IMDEDGWLHT GDIGLWLPGG RLKIIDRKKN IFKLAQGEYI APEKIENVYT KCRFVSQCFI HGDSFNSSLV AIVAVDPDVL
601: KDWAASEDIK YENLGQLCKD PKVRKAVLAE MDIVGREAQL RGFEFAKAVT LVPEPFTLEN GLLTPTFKVK RPQAKAYFAE AISKMYAEIA AWDPMPSKL
001: MEFASPEQRR LETIRSHIDT SPTNDQSSSL FLNATASSAS PFFKEDSYSV VLPEKLDTGK WNVYRSKRSP TKLVSRFPDH PEIGTLHDNF VHAVETYAEN
101: KYLGTRVRSD GTIGEYSWMT YGEAASERQA IGSGLLFHGV NQGDCVGLYF INRPEWLVVD HACAAYSFVS VPLYDTLGPD AVKFVVNHAN LQAIFCVPQT
201: LNILLSFLAE IPSIRLIVVV GGADEHLPSL PRGTGVTIVS YQKLLSQGRS SLHPFSPPKP EDIATICYTS GTTGTPKGVV LTHGNLIANV AGSSVEAEFF
301: PSDVYISYLP LAHIYERANQ IMGVYGGVAV GFYQGDVFKL MDDFAVLRPT IFCSVPRLYN RIYDGITSAV KSSGVVKKRL FEIAYNSKKQ AIINGRTPSA
401: FWDKLVFNKI KEKLGGRVRF MGSGASPLSP DVMDFLRICF GCSVREGYGM TETSCVISAM DDGDNLSGHV GSPNPACEVK LVDVPEMNYT SDDQPYPRGE
501: ICVRGPIIFK GYYKDEEQTR EILDGDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY TKCRFVSQCF IHGDSFNSSL VAIVSVDPEV
601: MKDWAASEGI KYEHLGQLCN DPRVRKTVLA EMDDLGREAQ LRGFEFAKAV TLVPEPFTLE NGLLTPTFKI KRPQAKAYFA EAISKMYAEI AASNPIPSKL
101: KYLGTRVRSD GTIGEYSWMT YGEAASERQA IGSGLLFHGV NQGDCVGLYF INRPEWLVVD HACAAYSFVS VPLYDTLGPD AVKFVVNHAN LQAIFCVPQT
201: LNILLSFLAE IPSIRLIVVV GGADEHLPSL PRGTGVTIVS YQKLLSQGRS SLHPFSPPKP EDIATICYTS GTTGTPKGVV LTHGNLIANV AGSSVEAEFF
301: PSDVYISYLP LAHIYERANQ IMGVYGGVAV GFYQGDVFKL MDDFAVLRPT IFCSVPRLYN RIYDGITSAV KSSGVVKKRL FEIAYNSKKQ AIINGRTPSA
401: FWDKLVFNKI KEKLGGRVRF MGSGASPLSP DVMDFLRICF GCSVREGYGM TETSCVISAM DDGDNLSGHV GSPNPACEVK LVDVPEMNYT SDDQPYPRGE
501: ICVRGPIIFK GYYKDEEQTR EILDGDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY TKCRFVSQCF IHGDSFNSSL VAIVSVDPEV
601: MKDWAASEGI KYEHLGQLCN DPRVRKTVLA EMDDLGREAQ LRGFEFAKAV TLVPEPFTLE NGLLTPTFKI KRPQAKAYFA EAISKMYAEI AASNPIPSKL
Arabidopsis Description
LACS7Long chain acyl-CoA synthetase 7, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LKS5]
SUBAcon: [peroxisome,plastid]
SUBAcon: [peroxisome,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.