CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular

Predictor Summary:

nucleus 1
peroxisome 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, peroxisome
Any Predictor:	extracellular, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	secretory
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72011	Canola	peroxisome	92.21	67.3
Bra004467.1-P	Field mustard	peroxisome	90.91	20.09
AT2G47240.2	Thale cress	peroxisome	82.47	19.24
CDY51419	Canola	peroxisome	81.82	19.09
CDY27501	Canola	peroxisome	79.22	18.48
CDX95713	Canola	peroxisome	73.38	16.5
KRG96554	Soybean	peroxisome	62.99	14.65
VIT_07s0005g01790.t01	Wine grape	peroxisome	62.34	14.5
KRH68292	Soybean	endoplasmic reticulum	61.69	14.35
KRH69184	Soybean	peroxisome	60.39	14.09
PGSC0003DMT400023374	Potato	peroxisome	60.39	14.07
KRH31765	Soybean	peroxisome	59.09	13.79
TraesCS1B01G093600.1	Wheat	peroxisome	58.44	13.43
TraesCS1A01G075000.1	Wheat	golgi	58.44	13.43
TraesCS1D01G077600.1	Wheat	golgi	58.44	13.43
KXG21217	Sorghum	peroxisome	57.79	13.28
Zm00001d024723_P001	Maize	peroxisome	57.14	13.13
GSMUA_Achr8P10780_001	Banana	peroxisome	56.49	13.1
Os05t0132100-02	Rice	plasma membrane	56.49	13.0
HORVU1Hr1G016200.16	Barley	peroxisome	57.79	11.41
KRH66241	Soybean	peroxisome	25.32	11.08
CDX94232	Canola	peroxisome	46.1	10.74
CDX86825	Canola	peroxisome	46.1	10.66
CDY25270	Canola	peroxisome	45.45	10.62
CDY59237	Canola	peroxisome	45.45	10.51
CDY29350	Canola	peroxisome	45.45	10.51
CDY47618	Canola	peroxisome	42.21	9.75
CDY03515	Canola	peroxisome	42.21	9.75
CDY40856	Canola	peroxisome	46.1	9.69
CDY46530	Canola	peroxisome	43.51	8.52
CDX80638	Canola	peroxisome	33.77	7.44
CDX86151	Canola	peroxisome	33.77	7.44
CDY05217	Canola	plastid	33.12	7.42
CDY27725	Canola	plastid	33.12	7.42
CDY49993	Canola	mitochondrion	33.12	7.33
CDX74115	Canola	plastid	33.12	7.33
CDY64879	Canola	peroxisome	44.16	7.08
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	24.03	5.34
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	23.38	5.19
CDY66248	Canola	peroxisome	22.73	4.85
CDY15082	Canola	peroxisome	22.08	4.75
CDY67321	Canola	plastid	16.23	3.48
CDY65251	Canola	peroxisome	5.19	3.42
CDY53212	Canola	plastid	16.23	3.34
CDY01190	Canola	plastid	15.58	3.34
CDY12731	Canola	plastid	14.94	3.17
CDX80092	Canola	mitochondrion, peroxisome	1.95	1.02
CDY69216	Canola	peroxisome	1.95	0.73
CDY68722	Canola	peroxisome	1.3	0.7
CDX80093	Canola	peroxisome	1.95	0.7
CDY37793	Canola	peroxisome	1.95	0.7
CDX92843	Canola	peroxisome	0.65	0.47
Zm00001d010943_P001	Maize	peroxisome	0.0	0.0

Protein Annotations

EnsemblPlants:CDY71490	EnsemblPlantsGene:GSBRNA2T00016565001	Gene3D:3.40.50.12780	GO:A0A078JYK0	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF6	PFAM:PF00501
ProteinID:CDY71490	ProteinID:CDY71490.1	SUPFAM:SSF56801	UniParc:UPI0004EE7135	UniProt:A0A078JYK0	MapMan:35.1

Description

BnaAnng37650DBnaAnng37650D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JYK0]

Coordinates

chrLK046068:+:2..2418

Molecular Weight (calculated)

16948.6 Da

IEP (calculated)

4.910

GRAVY (calculated)

0.376

Length

154 amino acids

Sequence
(BLAST)

001: HTLTIIIICE TFISVGPYVW KTYKEAYEEV LQIGSALRAL GAEPGCRVGV YGINCPQWII AMEACAAHTL ICVPLYDTLG SGAVDYIVDH AEIDFVFVQD
101: TKIKGLLEPD SICSKRLKAI VSFTNVSKED SIKASEIGVK TYSWLDFLHM VGLS

Best Arabidopsis Sequence Match ( AT2G47240.1 )
(BLAST)

001: MKSFAAKVEE GVKGIDGKPS VGPVYRNLLS EKGFPPIDSE ITTAWDIFSK SVEKFPDNNM LGWRRIVDEK VGPYMWKTYK EVYEEVLQIG SALRAAGAEP
101: GSRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVEHAEID FVFVQDTKIK GLLEPDCKCA KRLKAIVSFT NVSDELSHKA SEIGVKTYSW
201: IDFLHMGREK PEDTNPPKAF NICTIMYTSG TSGDPKGVVL THQAVATFVV GMDLYMDQFE DKMTHDDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGN
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFRKIRDK LGGRIRLLVS GGAPLSPEIE
401: EFLRVTCCCF VVQGYGLTET LGGTALGFPD EMCMLGTVGI PAVYNEIRLE EVSEMGYDPL GENPAGEICI RGQCMFSGYY KNPELTEEVM KDGWFHTGDI
501: GEILPNGVLK IIDRKKNLIK LSQGEYVALE HLENIFGQNS VVQDIWVYGD SFKSMLVAVV VPNPETVNRW AKDLGFTKPF EELCSFPELK EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVERDLVT ATLKNRRNNL LKYYQVQIDE MYRKLASKKI

Arabidopsis Description

LACS1Long chain acyl-CoA synthetase 1 [Source:UniProtKB/Swiss-Prot;Acc:O22898]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.