Factsheet for TraesCS1B01G093600.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G077600.1	Wheat	golgi	98.96	98.96
TraesCS1A01G075000.1	Wheat	golgi	98.21	98.21
Os05t0132100-02	Rice	plasma membrane	85.22	85.35
KXG21217	Sorghum	peroxisome	85.22	85.22
Zm00001d024723_P001	Maize	peroxisome	85.07	85.07
HORVU1Hr1G016200.16	Barley	peroxisome	98.36	84.49
GSMUA_Achr8P10780_001	Banana	peroxisome	70.9	71.54
Zm00001d010943_P001	Maize	peroxisome	14.48	68.79
VIT_07s0005g01790.t01	Wine grape	peroxisome	66.42	67.22
KRH68292	Soybean	endoplasmic reticulum	64.93	65.71
KRG96554	Soybean	peroxisome	64.93	65.71
PGSC0003DMT400023374	Potato	peroxisome	64.33	65.2
KRH69184	Soybean	peroxisome	63.13	64.09
KRH31765	Soybean	peroxisome	62.84	63.79
AT2G47240.2	Thale cress	peroxisome	61.49	62.42
CDY69216	Canola	peroxisome	38.36	62.38
CDY51419	Canola	peroxisome	61.34	62.27
Bra021392.1-P	Field mustard	peroxisome	61.34	62.27
CDY27501	Canola	peroxisome	60.6	61.52
CDX80093	Canola	peroxisome	38.81	60.32
CDY37793	Canola	peroxisome	38.81	60.32
CDY68722	Canola	peroxisome	24.93	58.8
CDY72011	Canola	peroxisome	18.51	58.77
Bra004467.1-P	Field mustard	peroxisome	60.9	58.54
CDY71490	Canola	extracellular, peroxisome	13.43	58.44
CDX80092	Canola	mitochondrion, peroxisome	25.52	58.36
KRH66241	Soybean	peroxisome	29.55	56.25
CDX95713	Canola	peroxisome	55.37	54.16
TraesCS7B01G012700.1	Wheat	peroxisome	46.72	48.15
TraesCS5B01G147300.1	Wheat	peroxisome	47.46	48.04
TraesCS3B01G266100.1	Wheat	golgi	46.87	47.72
TraesCS5B01G415100.1	Wheat	peroxisome	46.42	46.98
TraesCS4B01G133700.3	Wheat	peroxisome	37.46	36.06
TraesCS5B01G131800.3	Wheat	peroxisome	36.72	35.04
TraesCS4B01G110600.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	33.88	32.57
TraesCS5B01G118000.1	Wheat	endoplasmic reticulum	31.79	30.52
TraesCS5B01G166400.1	Wheat	golgi	30.0	27.61
TraesCS3B01G570800.1	Wheat	peroxisome	8.36	27.32
TraesCS5B01G536200.1	Wheat	plastid	24.93	23.03
TraesCS5B01G536300.1	Wheat	mitochondrion, plastid	24.33	21.59

Protein Annotations

Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0004467	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0010025	GO:GO:0010143	GO:GO:0031957	PFAM:PF00501	ScanProsite:PS00455	PANTHER:PTHR43272
PANTHER:PTHR43272:SF6	SUPFAM:SSF56801	EnsemblPlantsGene:TraesCS1B01G093600	EnsemblPlants:TraesCS1B01G093600.1	TIGR:cd05927	SEG:seg

Description

No Description!

Coordinates

chr1B:-:94976815..94982993

Molecular Weight (calculated)

75017.7 Da

IEP (calculated)

7.778

GRAVY (calculated)

-0.252

Length

670 amino acids

Sequence
(BLAST)

001: MEGAKKQVFT IKVEDGKPGK DGRPAVGPVF RNILAKDGFP PLDPDMRTSW DVFRTAAGKY PDNRMLGWRP FKDGVPGPYL WKSYKEVYEE VLQIGSALQQ
101: LGVQPGSRVG IYGSNCPQWV VAMQACNGYS IICVPLYDTL GAGAVDYIID HAEIDVVFIQ DKKIKEILSP NCTSATRLKA LVAFTSATNE QIKDAEQIGM
201: KVYSWNDFLK MGKDKPVKPR PPQPNDTCTI MYTSGTSGQP KGVMLSHESH GMYVKGVDLF MDQFEDKMST EDVFLSFLPL AHILDRMIEE YFFHKGASVG
301: YYHGDLNALR DDLMELKPTL LVGVPRVYEK IYEGILKALA DLRPLRRVIF NALYNRKLAS MKAGYTQKTA SPFADMLAFR KVKARLGGRL RLLISGGAPL
401: STEIEEFLRV TSCAYFIQGY GLTETLGPST VGYPDDMSLV GTAGVAATFT ELRLEEVPEM GYDPLGVPSR GEILIRGSTV FTGYYKNPEL TNEVMVDGWF
501: HTGDIGEMSP DGILKVIDRK KNIFKLSQGE YVAVEYLEKV YVFPPIIEDI WVYGDSYKSM LVAVVNPHEE NTMKWAGSNG YKGSFSEICK SEGLKEHVLK
601: ELAAAAQKNK LRGFEYIKGV VLDPVPFDIE RDLVTATMKK RRNYMLKYYQ PEIDKVYKTL EGQRAANKAK

Best Arabidopsis Sequence Match ( AT2G47240.3 )
(BLAST)

001: MKSFAAKVEE GVKGIDGKPS VGPVYRNLLS EKGFPPIDSE ITTAWDIFSK SVEKFPDNNM LGWRRIVDEK VGPYMWKTYK EVYEEVLQIG SALRAAGAEP
101: GSRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVEHAEID FVFVQDTKIK GLLEPDCKCA KRLKAIVSFT NVSDELSHKA SEIGVKTYSW
201: IDFLHMGREK PEDTNPPKAF NICTIMYTSG TSGDPKGVVL THQAVATFVV GMDLYMDQFE DKMTHDDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGN
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFRKIRDK LGGRIRLLVS GGAPLSPEIE
401: EFLRVTCCCF VVQGYGLTET LGGTALGFPD EMCMLGTVGI PAVYNEIRLE EVSEMGYDPL GENPAGEICI RGQCMFSGYY KNPELTEEVM KDGWFHTGDI
501: GEILPNGVLK IIDRKKNLIK LSQGEYVALE HLENIFGQNS VVQDIWVYGD SFKSMLVAVV VPNPETVNRW AKDLGFTKPF EELCSFPELK EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVERDLVT ATLKNRRNNL LKYYQVQIDE MYRKLASKKI

Arabidopsis Description

LACS1Long chain acyl-CoA synthetase 1 [Source:UniProtKB/Swiss-Prot;Acc:O22898]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.