Factsheet for PGSC0003DMT400023374

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g01790.t01	Wine grape	peroxisome	72.92	72.81
KRG96554	Soybean	peroxisome	71.56	71.45
KRH68292	Soybean	endoplasmic reticulum	71.56	71.45
KRH69184	Soybean	peroxisome	70.05	70.15
KRH31765	Soybean	peroxisome	69.89	70.0
GSMUA_Achr8P10780_001	Banana	peroxisome	66.26	65.96
TraesCS1B01G093600.1	Wheat	peroxisome	65.2	64.33
TraesCS1A01G075000.1	Wheat	golgi	64.9	64.03
TraesCS1D01G077600.1	Wheat	golgi	64.75	63.88
KXG21217	Sorghum	peroxisome	64.3	63.43
Os05t0132100-02	Rice	plasma membrane	64.15	63.38
KRH66241	Soybean	peroxisome	33.74	63.35
AT2G47240.2	Thale cress	peroxisome	63.09	63.18
CDY72011	Canola	peroxisome	20.12	63.03
CDY51419	Canola	peroxisome	62.63	62.73
Bra021392.1-P	Field mustard	peroxisome	62.63	62.73
Zm00001d024723_P001	Maize	peroxisome	63.24	62.39
CDY69216	Canola	peroxisome	38.73	62.14
CDY27501	Canola	peroxisome	61.88	61.97
CDY68722	Canola	peroxisome	26.48	61.62
CDX80092	Canola	mitochondrion, peroxisome	27.08	61.09
CDY71490	Canola	extracellular, peroxisome	14.07	60.39
CDY37793	Canola	peroxisome	39.03	59.86
CDX80093	Canola	peroxisome	39.03	59.86
Bra004467.1-P	Field mustard	peroxisome	62.93	59.68
Zm00001d010943_P001	Maize	peroxisome	12.25	57.45
CDX95713	Canola	peroxisome	57.03	55.04
HORVU1Hr1G016200.16	Barley	peroxisome	64.75	54.87
PGSC0003DMT400000613	Potato	peroxisome	47.81	48.17
PGSC0003DMT400064817	Potato	peroxisome	47.5	47.65
PGSC0003DMT400014954	Potato	cytosol	8.02	45.69
PGSC0003DMT400063438	Potato	peroxisome	5.3	38.04
PGSC0003DMT400002337	Potato	mitochondrion	32.22	30.6
PGSC0003DMT400044860	Potato	peroxisome	32.07	29.2
PGSC0003DMT400000868	Potato	peroxisome	31.32	28.32
PGSC0003DMT400053079	Potato	cytosol	21.94	23.39

Protein Annotations

EnsemblPlants:PGSC0003DMT400023374	EnsemblPlantsGene:PGSC0003DMG400009052	EntrezGene:102594336	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ncoils:Coil	PANTHER:PTHR43272
PANTHER:PTHR43272:SF6	PFAM:PF00501	PGSC:PGSC0003DMG400009052	RefSeq:XP_006349170.1	RefSeq:XP_015164978.1	ScanProsite:PS00455
SEG:seg	SUPFAM:SSF56801	UniParc:UPI0002962D15	UniProt:M1AI85	MapMan:50.6.2	:

Description

Long-chain-fatty-acid CoA ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400009052]

Coordinates

chr1:-:62934657..62940557

Molecular Weight (calculated)

74755.2 Da

IEP (calculated)

6.519

GRAVY (calculated)

-0.326

Length

661 amino acids

Sequence
(BLAST)

001: MSKFGLKVEE GKEGKNGEPS IGPVYRNPIA KNGFPSADPD LSTAWQLFRS AVEKYPGNRM LGWRDFKDGK WGSYNWKTYK EAYEETLQTG SALRAHGIEP
101: GARIGIYGAN CPQWIVAMEA CSAHSLICVP LYDTLGSGAV DFIIEHAEID IVFVQDKKVK ELLNEECTHA KRLKLIVCFT SLQQEEKDKA VSMDIKPYSW
201: NEFLNMGKEN PSEPSPPQPL DICTIMYTSG TSGEPKGVIL THENMTASVT GVDHFMEEFE DKMTVDDVYI SFLPLAHILD RMIEEFFFHR GASVGYFHGN
301: INEIQEDMME LKPTFLAGVP RVYEKVHEGV LKALEELNPF RRHMFHVLYN LKLKWMNLGY KQKYASRLAD LLAFRKVKNR LGGRIRLIVS GGAPLSSEVE
401: EFLRVTSCGF VLQGYGLTET CGLATIGHPD EMCMLGTVGP PFVFTEVRLE EVPEMGYDPL ADPPRGEICV RGRTTFAGYY KNPELTKEAI KDGWFHTGDI
501: GEMMPNGVVK VIDRKKNVIK LSQGEYVALE YLEKVYGIAP IVEDIWVYGD SFKSMLVAVV APHEGNTKKW ADKNGHKGSI TELCSLQDLN QYVLLELKSA
601: AERNKLRGFE NIKGVILEPQ PFEFDKELVT ATMKKRRERL LKRYKVEIDD LYKRLNAAAK R

Best Arabidopsis Sequence Match ( AT2G47240.3 )
(BLAST)

001: MKSFAAKVEE GVKGIDGKPS VGPVYRNLLS EKGFPPIDSE ITTAWDIFSK SVEKFPDNNM LGWRRIVDEK VGPYMWKTYK EVYEEVLQIG SALRAAGAEP
101: GSRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVEHAEID FVFVQDTKIK GLLEPDCKCA KRLKAIVSFT NVSDELSHKA SEIGVKTYSW
201: IDFLHMGREK PEDTNPPKAF NICTIMYTSG TSGDPKGVVL THQAVATFVV GMDLYMDQFE DKMTHDDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGN
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFRKIRDK LGGRIRLLVS GGAPLSPEIE
401: EFLRVTCCCF VVQGYGLTET LGGTALGFPD EMCMLGTVGI PAVYNEIRLE EVSEMGYDPL GENPAGEICI RGQCMFSGYY KNPELTEEVM KDGWFHTGDI
501: GEILPNGVLK IIDRKKNLIK LSQGEYVALE HLENIFGQNS VVQDIWVYGD SFKSMLVAVV VPNPETVNRW AKDLGFTKPF EELCSFPELK EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVERDLVT ATLKNRRNNL LKYYQVQIDE MYRKLASKKI

Arabidopsis Description

LACS1Long chain acyl-CoA synthetase 1 [Source:UniProtKB/Swiss-Prot;Acc:O22898]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.