Factsheet for PGSC0003DMT400064817

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g109180.2.1	Tomato	nucleus	98.48	98.48
KRH48841	Soybean	peroxisome	26.4	79.45
VIT_03s0063g01880.t01	Wine grape	peroxisome	76.93	76.93
KRG89197	Soybean	peroxisome	74.05	73.94
KRH49531	Soybean	peroxisome	73.9	73.79
KRH24533	Soybean	peroxisome	72.99	73.32
KRH29538	Soybean	peroxisome	72.69	73.02
GSMUA_Achr7P27390_001	Banana	peroxisome	70.11	70.43
TraesCS5D01G420300.1	Wheat	golgi	69.2	68.88
Os11t0558300-01	Rice	peroxisome	69.04	68.84
KXG28707	Sorghum	peroxisome	69.2	68.57
TraesCS5B01G415100.1	Wheat	peroxisome	68.59	68.28
TraesCS5A01G411500.2	Wheat	golgi	68.74	68.22
AT1G49430.1	Thale cress	peroxisome	68.59	67.97
HORVU5Hr1G099350.15	Barley	peroxisome	68.89	67.96
Zm00001d053127_P005	Maize	mitochondrion	68.44	67.92
CDY59237	Canola	peroxisome	68.44	67.72
CDY29350	Canola	peroxisome	68.13	67.42
Bra032284.1-P	Field mustard	peroxisome	68.13	67.42
PGSC0003DMT400000613	Potato	peroxisome	55.08	55.34
PGSC0003DMT400023374	Potato	peroxisome	47.65	47.5
PGSC0003DMT400014954	Potato	cytosol	8.35	47.41
PGSC0003DMT400063438	Potato	peroxisome	5.46	39.13
AT2G47245.1	Thale cress	endoplasmic reticulum	7.59	38.46
PGSC0003DMT400002337	Potato	mitochondrion	32.32	30.6
PGSC0003DMT400044860	Potato	peroxisome	32.78	29.75
PGSC0003DMT400000868	Potato	peroxisome	32.02	28.86
PGSC0003DMT400053079	Potato	cytosol	19.58	20.81

Protein Annotations

EntrezGene:102589531	Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
GO:GO:0001676	GO:GO:0003674	GO:GO:0003824	GO:GO:0004467	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006629	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009506	GO:GO:0009605	GO:GO:0009607
GO:GO:0009653	GO:GO:0009791	GO:GO:0009987	GO:GO:0010143	GO:GO:0010311	GO:GO:0031957
GO:GO:0050832	UniProt:M1CCY6	PFAM:PF00501	PFAM:PF13193	EnsemblPlantsGene:PGSC0003DMG400025174	PGSC:PGSC0003DMG400025174
EnsemblPlants:PGSC0003DMT400064817	ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF4	SUPFAM:SSF56801	UniParc:UPI000294FFD7
RefSeq:XP_006365488.1	RefSeq:XP_006365489.1	RefSeq:XP_006365490.1	:	:	:

Description

Acyl CoA synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400025174]

Coordinates

chr1:-:85500884..85506041

Molecular Weight (calculated)

73959.7 Da

IEP (calculated)

6.276

GRAVY (calculated)

-0.231

Length

659 amino acids

Sequence
(BLAST)

001: MSNYTVKVEE SRPAADGKPS AGPVYRNIYA KDGLMEMPTR FESPWDFFSE SVKKNPKNQM LGRRQVVDKK AGPYSWLTYE EVYETTVKIG SAIRNRGVNP
101: GDRCGIYGVN CPEWIMAMEA CNSQAISYVP LYDSLGANAV EFIINHAEVS IAFAQESKIP AILSCLSKCN SYLKTIVSFG NISSTQKSEA EEQGVACFSW
201: EEFVQMGSLD HELPQKRKTD ISSIMYTSGT TGEPKGVILT NGAFMGEVLS MDQLLVETDR EGTGEDVYFS FLPLAHIFDQ IIETYCIYRG ASIGFWQGDI
301: RYLIEDLLVL KPTIFCGVPR VYDRIYTGVM DKIEAGGTLK KLLFQFAYNY KLRNMEKGLR QDEAAPRFDR LVFDKIKLAF GGRVRLMLSG AAPLPKHIEE
401: FLRVTCCCSL SQGYGLTESC GGCLTSIANV HSMTGTVGVP MTTIEARLES VPEMGYDALA SVPRGEICLR GKTLFSGYHK REDLTKSVLV DGWFHTGDIG
501: EWQPDGAMKI IDRKKNIFKL SQGEYVAVEN IEGVYSRCPL VTSIWIYGNS FESFLVAVVV PERKALEDWA SSNQETGDFS SLCNNTKARK YILDELNSTA
601: RKHQLRGFEM LRAVHLEPNP FDIERELVTP TFKLKRPQLL NYYKDIVDQL YKEAKAKTA

Best Arabidopsis Sequence Match ( AT1G49430.1 )
(BLAST)

001: MSLAADNVLL VEEGRPATAE HPSAGPVYRC KYAKDGLLDL PTDIDSPWQF FSEAVKKYPN EQMLGQRVTT DSKVGPYTWI TYKEAHDAAI RIGSAIRSRG
101: VDPGHCCGIY GANCPEWIIA MEACMSQGIT YVPLYDSLGV NAVEFIINHA EVSLVFVQEK TVSSILSCQK GCSSNLKTIV SFGEVSSTQK EEAKNQCVSL
201: FSWNEFSLMG NLDEANLPRK RKTDICTIMY TSGTTGEPKG VILNNAAISV QVLSIDKMLE VTDRSCDTSD VFFSYLPLAH CYDQVMEIYF LSRGSSVGYW
301: RGDIRYLMDD VQALKPTVFC GVPRVYDKLY AGIMQKISAS GLIRKKLFDF AYNYKLGNMR KGFSQEEASP RLDRLMFDKI KEALGGRAHM LLSGAAPLPR
401: HVEEFLRIIP ASNLSQGYGL TESCGGSFTT LAGVFSMVGT VGVPMPTVEA RLVSVPEMGY DAFSADVPRG EICLRGNSMF SGYHKRQDLT DQVLIDGWFH
501: TGDIGEWQED GSMKIIDRKK NIFKLSQGEY VAVENLENTY SRCPLIAQIW VYGNSFESFL VGVVVPDRKA IEDWAKLNYQ SPNDFESLCQ NLKAQKYFLD
601: ELNSTAKQYQ LKGFEMLKAI HLEPNPFDIE RDLITPTFKL KRPQLLQHYK GIVDQLYSEA KRSMA

Arabidopsis Description

LACS2Long chain acyl-CoA synthetase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIA9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.