Factsheet for PGSC0003DMT400000868

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009040.1.1	Tomato	plastid	92.48	94.15
PGSC0003DMT400044860	Potato	peroxisome	82.35	82.92
VIT_12s0057g01270.t01	Wine grape	peroxisome	72.5	73.71
AT2G04350.1	Thale cress	peroxisome	69.9	70.97
KRG89995	Soybean	endoplasmic reticulum, mitochondrion	70.31	70.9
CDY15082	Canola	peroxisome	69.36	70.81
KRG89997	Soybean	endoplasmic reticulum	65.25	70.77
Bra013210.1-P	Field mustard	peroxisome	69.63	70.6
CDY66248	Canola	peroxisome	69.49	70.46
KRH17725	Soybean	peroxisome	69.36	69.93
Os05t0317200-01	Rice	plastid	68.95	69.42
TraesCS5D01G174000.1	Wheat	peroxisome	68.67	68.96
TraesCS5B01G166400.1	Wheat	golgi	68.67	68.96
TraesCS5A01G169600.1	Wheat	golgi	68.54	68.82
HORVU5Hr1G052100.13	Barley	peroxisome	68.81	68.44
KXG27640	Sorghum	peroxisome	67.03	67.49
Zm00001d005019_P004	Maize	plasma membrane	67.03	67.49
Zm00001d052399_P007	Maize	peroxisome	66.76	67.22
PGSC0003DMT400002337	Potato	mitochondrion	59.51	62.5
TraesCS3B01G570800.1	Wheat	peroxisome	15.32	54.63
PGSC0003DMT400063438	Potato	peroxisome	4.1	32.61
PGSC0003DMT400064817	Potato	peroxisome	28.86	32.02
PGSC0003DMT400000613	Potato	peroxisome	28.59	31.86
PGSC0003DMT400023374	Potato	peroxisome	28.32	31.32
PGSC0003DMT400014954	Potato	cytosol	4.1	25.86
PGSC0003DMT400053079	Potato	cytosol	18.33	21.61

Protein Annotations

EntrezGene:102594464	Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
UniProt:M0ZHG6	PFAM:PF00501	EnsemblPlantsGene:PGSC0003DMG400000329	PGSC:PGSC0003DMG400000329	EnsemblPlants:PGSC0003DMT400000868	ScanProsite:PS00455
PANTHER:PTHR43272	PANTHER:PTHR43272:SF30	SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI00029659BC	RefSeq:XP_006353549.1
RefSeq:XP_006353550.1	SEG:seg	:	:	:	:

Description

Long-chain acyl-CoA synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400000329]

Coordinates

chr12:-:3493797..3499115

Molecular Weight (calculated)

79649.4 Da

IEP (calculated)

8.537

GRAVY (calculated)

-0.050

Length

731 amino acids

Sequence
(BLAST)

001: MEGSDGSNPN MNVVERMTSS SYVSLFKDQG SFGVVAAVVI AIIVPLFLSV VLMGKKKAKQ RGVPVKAGGE AGLAMRNAKS AKLIEVPWEG ATTMTALFEK
101: SCRKHSSKRC LGTRKLVSRD FVTAKDGRKF EKLHLGEYHW ESYGQTFDRA CNFASGLVNL GHDVETRAAI FSETRAEWII AFQGCFRQNI TVVTIYASLG
201: DDALIHSLNE TQASTLICDA KQLKKLAAIG SNLKTISNVI YFEDDETAID SSTCTNIDSW RVTSFSEVEN LGKSNPIQPI LPIKKDIAVI MYTSGSTGMP
301: KGVMITHGNI VATAAAVMTV IPKLGSNDVY LGYLPLAHVF ELAAEIVMLT AGASIGYGSA LSLTDTSNKI VKGTKGDASA LKPTLMAAVP AILDRVKDGV
401: IKKVEEKGGS AKKIFDIAFK RRLTAIEGSW FGAWGLEKIL WEVMIFKKIR SVLGGDIRFM LCGGAPLSGD TQRFINICMG APIGQGYGLT ETFAGAAFSE
501: SDDPSVGRVG PPVPCCYIKL ISWEEGGYTI ADKPMPRGEV IVGGNSVTAG YFNNSDKTNE VYKVDERGMR WFYTGDIGRF HPDGCLEIID RKKDIVKLQH
601: GEYISLGKVE AALSSSNYVD NIMAYADPFH NYCVALVVPS QKVLEKWAQE NGIEHRAFSD LCNKVEAVNE VQQSLSKVGK AARLDKFEIP AKIKLIPEPW
701: TPESGLVTAA LKLKREPLKA KFKDELLKLY Q

Best Arabidopsis Sequence Match ( AT2G04350.1 )
(BLAST)

001: MEDSGVNPMD SPSKGSDFGV YGIIGGGIVA LLVPVLLSVV LNGTKKGKKR GVPIKVGGEE GYTMRHARAP ELVDVPWEGA ATMPALFEQS CKKYSKDRLL
101: GTREFIDKEF ITASDGRKFE KLHLGEYKWQ SYGEVFERVC NFASGLVNVG HNVDDRVAIF SDTRAEWFIA FQGCFRQSIT VVTIYASLGE EALIYSLNET
201: RVSTLICDSK QLKKLSAIQS SLKTVKNIIY IEEDGVDVAS SDVNSMGDIT VSSISEVEKL GQKNAVQPIL PSKNGVAVIM FTSGSTGLPK GVMITHGNLV
301: ATAAGVMKVV PKLDKNDTYI AYLPLAHVFE LEAEIVVFTS GSAIGYGSAM TLTDTSNKVK KGTKGDVSAL KPTIMTAVPA ILDRVREGVL KKVEEKGGMA
401: KTLFDFAYKR RLAAVDGSWF GAWGLEKMLW DALVFKKIRA VLGGHIRFML VGGAPLSPDS QRFINICMGS PIGQGYGLTE TCAGATFSEW DDPAVGRVGP
501: PLPCGYVKLV SWEEGGYRIS DKPMPRGEIV VGGNSVTAGY FNNQEKTDEV YKVDEKGTRW FYTGDIGRFH PDGCLEVIDR KKDIVKLQHG EYVSLGKVEA
601: ALGSSNYVDN IMVHADPINS YCVALVVPSR GALEKWAEEA GVKHSEFAEL CEKGEAVKEV QQSLTKAGKA AKLEKFELPA KIKLLSEPWT PESGLVTAAL
701: KIKREQIKSK FKDELSKLYA

Arabidopsis Description

LACS8Long chain acyl-CoA synthetase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJD4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.