Factsheet for Bra013210.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66248	Canola	peroxisome	99.45	99.45
CDY15082	Canola	peroxisome	98.06	98.74
AT2G04350.1	Thale cress	peroxisome	88.49	88.61
KRG89995	Soybean	endoplasmic reticulum, mitochondrion	72.4	72.0
KRG89997	Soybean	endoplasmic reticulum	67.13	71.81
KRH17725	Soybean	peroxisome	71.71	71.31
VIT_12s0057g01270.t01	Wine grape	peroxisome	70.74	70.93
PGSC0003DMT400044860	Potato	peroxisome	70.74	70.25
Solyc07g045290.2.1	Tomato	plastid	70.74	70.25
PGSC0003DMT400000868	Potato	peroxisome	70.6	69.63
KXG27640	Sorghum	peroxisome	69.07	68.59
Solyc12g009040.1.1	Tomato	plastid	68.24	68.52
Os05t0317200-01	Rice	plastid	68.1	67.63
Zm00001d005019_P004	Maize	plasma membrane	68.1	67.63
Zm00001d052399_P007	Maize	peroxisome	67.68	67.22
TraesCS5B01G166400.1	Wheat	golgi	67.27	66.62
TraesCS5D01G174000.1	Wheat	peroxisome	67.13	66.48
TraesCS5A01G169600.1	Wheat	golgi	66.85	66.21
HORVU5Hr1G052100.13	Barley	peroxisome	67.27	65.99
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	62.41	64.94
TraesCS3B01G570800.1	Wheat	peroxisome	14.98	52.68
Bra013735.1-P	Field mustard	peroxisome	28.71	33.23
Bra033159.1-P	Field mustard	peroxisome	27.18	32.45
Bra020793.1-P	Field mustard	plastid	28.02	32.11
Bra035259.1-P	Field mustard	peroxisome	29.54	31.98
Bra001177.1-P	Field mustard	plastid	30.65	31.75
Bra021392.1-P	Field mustard	peroxisome	28.57	31.21
Bra032284.1-P	Field mustard	peroxisome	28.71	31.08
Bra009951.1-P	Field mustard	peroxisome	29.4	30.37
Bra004467.1-P	Field mustard	peroxisome	28.57	29.56
Bra027700.1-P	Field mustard	peroxisome	29.54	25.79
Bra032757.1-P	Field mustard	plastid	21.22	21.28
Bra001919.1-P	Field mustard	plastid	21.08	21.17

Protein Annotations

Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	EnsemblPlantsGene:Bra013210
EnsemblPlants:Bra013210.1	EnsemblPlants:Bra013210.1-P	GO:GO:0001676	GO:GO:0003674	GO:GO:0003824	GO:GO:0004467
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536	GO:GO:0009941	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	UniProt:M4D9Q0	PFAM:PF00501	ScanProsite:PS00455	PANTHER:PTHR43272
PANTHER:PTHR43272:SF30	SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI0002540899	SEG:seg	:

Description

AT2G04350 (E=0.0) | long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)

Coordinates

chrA03:+:19864119..19867256

Molecular Weight (calculated)

78607.7 Da

IEP (calculated)

7.470

GRAVY (calculated)

-0.093

Length

721 amino acids

Sequence
(BLAST)

001: MEDPPMASSF LENSKISEYG LSTIVAGGVA ALLVPVLLSV VLTGTKKGKK RGVPVKVGGE EGYAMRHARG PDLVDVPWPG ATTMAALFEQ ACKKYSSNRL
101: LGTREFIDKE IVTSSDGRKF EKLHLGEYRW QSYGEVFERV CNFASGLVGV GHNVDTRVAI FSDTRAEWFI AFQGCFRQNL TVVTIYASLG EEALIYSLNE
201: TQVSTLICDS KQLKKLSAIQ SSLKTVKNII YIEEDGVEVA SSEVNGLGDI TVSSISEVEK LGKERPVEPS FPSKNGVAVI MFTSGSTGLP KGVMITHGNL
301: IATAAGVMKV IPKLNKNDVY IAYLPLAHVF ELEAEIVVFT WGSAIGYGSA MTLTDTSNKV KKGTKGDVSV LNPTLMTAVP AILDRVRDGV LKKVEEKGGM
401: AKTLFNFAYK RRLAAVNGSW FGAWGLEKMF WDTLVFTKIR AVLGGRIRFM LVGGAPLSPD SQRFINICMG SPIGQGYGLT ETCAGATFSE WDDPTAGRVG
501: PPLPCGYIKL VSWEEGGYRV SDKPMPRGEI VVGGNSVTAG YFNNQEKTDE VYKVDENGTR WFYTGDIGRF HPDGCLEVID RKKDIVKLQH GEYVSLGKVE
601: AALGSSNYVD NIMVHADPMN SYCVALVVPS HGALEKWAEE AGVKSSDFSE LCENGEAVKE VQQSLIKAAK TAKLEKFEIP AKIKLLPEQW TPESGLVTAA
701: LKLKREQIKA KFKDELHKLY A

Best Arabidopsis Sequence Match ( AT2G04350.1 )
(BLAST)

001: MEDSGVNPMD SPSKGSDFGV YGIIGGGIVA LLVPVLLSVV LNGTKKGKKR GVPIKVGGEE GYTMRHARAP ELVDVPWEGA ATMPALFEQS CKKYSKDRLL
101: GTREFIDKEF ITASDGRKFE KLHLGEYKWQ SYGEVFERVC NFASGLVNVG HNVDDRVAIF SDTRAEWFIA FQGCFRQSIT VVTIYASLGE EALIYSLNET
201: RVSTLICDSK QLKKLSAIQS SLKTVKNIIY IEEDGVDVAS SDVNSMGDIT VSSISEVEKL GQKNAVQPIL PSKNGVAVIM FTSGSTGLPK GVMITHGNLV
301: ATAAGVMKVV PKLDKNDTYI AYLPLAHVFE LEAEIVVFTS GSAIGYGSAM TLTDTSNKVK KGTKGDVSAL KPTIMTAVPA ILDRVREGVL KKVEEKGGMA
401: KTLFDFAYKR RLAAVDGSWF GAWGLEKMLW DALVFKKIRA VLGGHIRFML VGGAPLSPDS QRFINICMGS PIGQGYGLTE TCAGATFSEW DDPAVGRVGP
501: PLPCGYVKLV SWEEGGYRIS DKPMPRGEIV VGGNSVTAGY FNNQEKTDEV YKVDEKGTRW FYTGDIGRFH PDGCLEVIDR KKDIVKLQHG EYVSLGKVEA
601: ALGSSNYVDN IMVHADPINS YCVALVVPSR GALEKWAEEA GVKHSEFAEL CEKGEAVKEV QQSLTKAGKA AKLEKFELPA KIKLLSEPWT PESGLVTAAL
701: KIKREQIKSK FKDELSKLYA

Arabidopsis Description

LACS8Long chain acyl-CoA synthetase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJD4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.