Factsheet for Bra003678.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi

Predictor Summary:

cytosol 2
plastid 2
peroxisome 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, secretory
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	99.86	99.86
AT1G77590.1	Thale cress	peroxisome, plastid	91.49	91.75
Os11t0169800-01	Rice	plastid	40.84	77.96
VIT_18s0001g02810.t01	Wine grape	vacuole	77.34	76.9
Solyc11g018580.1.1	Tomato	plastid	66.38	75.41
KRH18736	Soybean	peroxisome, plastid	75.04	74.71
GSMUA_Achr1P13190_001	Banana	vacuole	68.98	74.45
GSMUA_Achr8P30270_001	Banana	peroxisome, plastid	74.6	74.17
GSMUA_Achr11P...	Banana	endoplasmic reticulum	74.17	73.74
KXG23059	Sorghum	endoplasmic reticulum	74.17	73.64
PGSC0003DMT400002337	Potato	mitochondrion	73.88	73.56
TraesCS5B01G118000.1	Wheat	endoplasmic reticulum	73.45	72.92
TraesCS5D01G129800.1	Wheat	golgi	73.45	72.92
TraesCS5A01G117700.1	Wheat	endoplasmic reticulum, vacuole	73.3	72.78
KRH53234	Soybean	mitochondrion	72.87	72.77
Os12t0168700-01	Rice	vacuole	73.16	72.64
Zm00001d023538_P002	Maize	plastid	73.16	72.64
HORVU5Hr1G036460.1	Barley	endoplasmic reticulum	72.73	72.21
TraesCS4D01G108300.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	71.14	70.73
TraesCS4B01G110600.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	71.0	70.59
HORVU4Hr1G019780.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	71.0	70.59
TraesCS4A01G207000.1	Wheat	golgi	71.14	70.43
KRH16338	Soybean	plastid, vacuole	65.51	70.17
OQU82968	Sorghum	endoplasmic reticulum, plasma membrane	70.56	70.16
Zm00001d053009_P009	Maize	plastid	70.42	69.91
GSMUA_Achr2P08130_001	Banana	peroxisome, plastid	57.14	69.84
Bra013210.1-P	Field mustard	peroxisome	64.94	62.41
Bra013735.1-P	Field mustard	peroxisome	29.58	32.91
Bra033159.1-P	Field mustard	peroxisome	27.99	32.12
Bra020793.1-P	Field mustard	plastid	28.86	31.8
Bra001177.1-P	Field mustard	plastid	31.89	31.75
Bra021392.1-P	Field mustard	peroxisome	30.16	31.67
Bra035259.1-P	Field mustard	peroxisome	30.16	31.38
Bra032284.1-P	Field mustard	peroxisome	29.87	31.08
Bra009951.1-P	Field mustard	peroxisome	30.88	30.66
Bra004467.1-P	Field mustard	peroxisome	30.16	29.99
Bra027700.1-P	Field mustard	peroxisome	30.45	25.54
Bra001919.1-P	Field mustard	plastid	22.51	21.73
Bra032757.1-P	Field mustard	plastid	21.93	21.14

Protein Annotations

Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	EnsemblPlantsGene:Bra003678	EnsemblPlants:Bra003678.1
EnsemblPlants:Bra003678.1-P	GO:GO:0001676	GO:GO:0003674	GO:GO:0003824	GO:GO:0004467	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	UniProt:M4CHJ5
PFAM:PF00501	ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF29	SUPFAM:SSF56801	UniParc:UPI00025414D3
SEG:seg	:	:	:	:	:

Description

AT1G77590 (E=0.0) LACS9 | LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9); long-chain-fatty-acid-CoA ligase

Coordinates

chrA07:+:14423768..14426594

Molecular Weight (calculated)

75985.6 Da

IEP (calculated)

6.649

GRAVY (calculated)

-0.061

Length

693 amino acids

Sequence
(BLAST)

001: MIPYAAGVIV PLALTLLVRN AKKDKKRGVV VDDVGGEPGH TVRNHRFKDP VSSHWEDIST LPELFEISCK SHSERFFLGT RRLIAREVET SEDGKVFEKL
101: HLGDYEWKTF GETLDAVCSF ASGLVQIGHK SEERVAIFAD TREEWFIALQ GCFRRNVTVV TIYSSLGEEA LCHSLNETEV TTVICGNKEL KKLMDISQQL
201: ETVKRVICMD DEFPSEASST WTTTSLADVQ KLGRESSVDP SFPLSADVAV IMYTSGSTGL PKGVMMTHGN VLATVSAVMT IVPDLGKRDT YMAYLPLAHI
301: LELAAESVMA TIGSAIGYGS PLTLTDTSNK IKKGTKGDVT ALKPTIMTAV PAILDRVRDG VRKKVDAKGG AAKKLFDFAY ARRLSAINGS WFGAWGLEKL
401: LWDVLVFGKI RAVLGGQLRY LLSGGAPLSG DTQRFINICV GAPIGQGYGL TETCAGGTFS EFDDTSVGRV GAPLPCSFVK LIDWPEGGYL ISDKPMPRGE
501: IVIGGSNITL GYFKNEEKTK EVYKVDEKGM RWFYTGDIGQ FHPDGCLEII DRKKDIVKLQ HGEYVSLGKV EAALSISPYV ENIMVHADPF YSYCVALVVA
601: AQQTLEGWAS KQGIEFTNFE ELCAKEQAVK EVYASLVKAA KQSRLEKFEI PAKIKVLAAP WTPESGLVTA ALKLKRDVIR KEFSEDLTKL YAS

Best Arabidopsis Sequence Match ( AT1G77590.1 )
(BLAST)

001: MIPYAAGVIV PLALTFLVQK SKKEKKRGVV VDVGGEPGYA IRNHRFTEPV SSHWEHISTL PELFEISCNA HSDRVFLGTR KLISREIETS EDGKTFEKLH
101: LGDYEWLTFG KTLEAVCDFA SGLVQIGHKT EERVAIFADT REEWFISLQG CFRRNVTVVT IYSSLGEEAL CHSLNETEVT TVICGSKELK KLMDISQQLE
201: TVKRVICMDD EFPSDVNSNW MATSFTDVQK LGRENPVDPN FPLSADVAVI MYTSGSTGLP KGVMMTHGNV LATVSAVMTI VPDLGKRDIY MAYLPLAHIL
301: ELAAESVMAT IGSAIGYGSP LTLTDTSNKI KKGTKGDVTA LKPTIMTAVP AILDRVRDGV RKKVDAKGGL SKKLFDFAYA RRLSAINGSW FGAWGLEKLL
401: WDVLVFRKIR AVLGGQIRYL LSGGAPLSGD TQRFINICVG APIGQGYGLT ETCAGGTFSE FEDTSVGRVG APLPCSFVKL VDWAEGGYLT SDKPMPRGEI
501: VIGGSNITLG YFKNEEKTKE VYKVDEKGMR WFYTGDIGRF HPDGCLEIID RKKDIVKLQH GEYVSLGKVE AALSISPYVE NIMVHADSFY SYCVALVVAS
601: QHTVEGWASK QGIDFANFEE LCTKEQAVKE VYASLVKAAK QSRLEKFEIP AKIKLLASPW TPESGLVTAA LKLKRDVIRR EFSEDLTKLY A

Arabidopsis Description

LACS9Long chain acyl-CoA synthetase 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAP8]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.