Factsheet for Solyc11g018580.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002337	Potato	mitochondrion	97.05	85.06
Os11t0169800-01	Rice	plastid	47.38	79.61
VIT_18s0001g02810.t01	Wine grape	vacuole	79.84	69.87
KRH53234	Soybean	mitochondrion	77.87	68.44
GSMUA_Achr2P08130_001	Banana	peroxisome, plastid	63.28	68.08
GSMUA_Achr8P30270_001	Banana	peroxisome, plastid	77.54	67.86
GSMUA_Achr11P...	Banana	endoplasmic reticulum	77.38	67.72
KRH18736	Soybean	peroxisome, plastid	76.89	67.39
AT1G77590.1	Thale cress	peroxisome, plastid	75.9	67.0
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	75.74	66.67
OQU82968	Sorghum	endoplasmic reticulum, plasma membrane	76.07	66.57
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	75.57	66.52
Zm00001d053009_P009	Maize	plastid	76.07	66.48
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	75.41	66.38
TraesCS4B01G110600.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	75.74	66.28
TraesCS4A01G207000.1	Wheat	golgi	75.9	66.14
HORVU4Hr1G019780.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	75.41	66.0
TraesCS4D01G108300.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	75.41	66.0
TraesCS5A01G117700.1	Wheat	endoplasmic reticulum, vacuole	75.25	65.76
TraesCS5D01G129800.1	Wheat	golgi	75.08	65.62
TraesCS5B01G118000.1	Wheat	endoplasmic reticulum	75.08	65.62
KXG23059	Sorghum	endoplasmic reticulum	74.92	65.47
Os12t0168700-01	Rice	vacuole	74.75	65.33
HORVU5Hr1G036460.1	Barley	endoplasmic reticulum	74.43	65.04
Zm00001d023538_P002	Maize	plastid	74.26	64.9
GSMUA_Achr1P13190_001	Banana	vacuole	68.03	64.64
KRH16338	Soybean	plastid, vacuole	65.25	61.51
Solyc07g045290.2.1	Tomato	plastid	65.41	54.96
Solyc12g009040.1.1	Tomato	plastid	63.44	53.9
Solyc08g008310.2.1	Tomato	peroxisome	32.13	32.83
Solyc08g082280.2.1	Tomato	nucleus, plastid	32.46	30.09
Solyc01g095750.2.1	Tomato	peroxisome	31.97	29.5
Solyc01g109180.2.1	Tomato	nucleus	31.15	28.83
Solyc09g075790.2.1	Tomato	peroxisome	29.51	28.66
Solyc09g075770.1.1	Tomato	peroxisome	32.46	28.37
Solyc01g099100.2.1	Tomato	plastid	32.3	28.3
Solyc09g092450.2.1	Tomato	plastid	24.1	20.33

Protein Annotations

Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	GO:GO:0003674	GO:GO:0003824
GO:GO:0004467	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0009987
GO:GO:0016020	UniProt:K4D6R2	PFAM:PF00501	ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF29
SUPFAM:SSF56801	EnsemblPlantsGene:Solyc11g018580.1	EnsemblPlants:Solyc11g018580.1.1	UniParc:UPI000276AA68	SEG:seg	:

Description

No Description!

Coordinates

chr11:+:8753165..8759597

Molecular Weight (calculated)

66268.7 Da

IEP (calculated)

6.303

GRAVY (calculated)

0.032

Length

610 amino acids

Sequence
(BLAST)

001: MEVSADGRSF EKLHLGDYEW LSYGQAFEIV CNFSSGLALL GHQRDERVAI FADTCEEWLM ALQSCFRRNV TVVTIYASLG EEALCYSLNQ TEVTTVICGQ
101: KELKKLADVS GQLDTVKRVI CIDNEIPSSA IIAAGSNWVL KTFSEVETLG RGNPVDPDLP VAADTAVIMY TSGSTGLPKG VMMTHRNVLA TASAVLTIVP
201: GLGSKDVYLA YLPLAHILEL AAETIVPGIG GSIGYGSPLT LTDTSNKIKK GTKGDASALS PSVMAAVPAI LDRVRDGVRK KVDAAGGFSK KLFDLAYSRR
301: LSAINGNWFG AWGLERHFWN LLVFKKVQAI LGGRIRFILS GGAPLSGDTQ RFINICLGAP IGQGYGLTET CAGGTFSDYD DTSVGRVGPP LPCSYIKLID
401: WAEGGYQTSD SPMPRGEIII GGPNVTLGYF KNEEKTKEVY KVDERGMSWF YTGDIGQFHA DGCLEIIDRK KDIVKLQHGE YVSLGKVEAA LIVSSYVDNI
501: MLHADPFHSY CVAIVVAAQA AVEDWARKHG INFVDFHELC QKEETIKEVY ASLVKAAKAA RLEKFEIPAK IKLLSEAWTP ESGLVTAALK LKRDVIKKAF
601: SQELAQLYSS

Best Arabidopsis Sequence Match ( AT1G77590.1 )
(BLAST)

001: MIPYAAGVIV PLALTFLVQK SKKEKKRGVV VDVGGEPGYA IRNHRFTEPV SSHWEHISTL PELFEISCNA HSDRVFLGTR KLISREIETS EDGKTFEKLH
101: LGDYEWLTFG KTLEAVCDFA SGLVQIGHKT EERVAIFADT REEWFISLQG CFRRNVTVVT IYSSLGEEAL CHSLNETEVT TVICGSKELK KLMDISQQLE
201: TVKRVICMDD EFPSDVNSNW MATSFTDVQK LGRENPVDPN FPLSADVAVI MYTSGSTGLP KGVMMTHGNV LATVSAVMTI VPDLGKRDIY MAYLPLAHIL
301: ELAAESVMAT IGSAIGYGSP LTLTDTSNKI KKGTKGDVTA LKPTIMTAVP AILDRVRDGV RKKVDAKGGL SKKLFDFAYA RRLSAINGSW FGAWGLEKLL
401: WDVLVFRKIR AVLGGQIRYL LSGGAPLSGD TQRFINICVG APIGQGYGLT ETCAGGTFSE FEDTSVGRVG APLPCSFVKL VDWAEGGYLT SDKPMPRGEI
501: VIGGSNITLG YFKNEEKTKE VYKVDEKGMR WFYTGDIGRF HPDGCLEIID RKKDIVKLQH GEYVSLGKVE AALSISPYVE NIMVHADSFY SYCVALVVAS
601: QHTVEGWASK QGIDFANFEE LCTKEQAVKE VYASLVKAAK QSRLEKFEIP AKIKLLASPW TPESGLVTAA LKLKRDVIRR EFSEDLTKLY A

Arabidopsis Description

LACS9Long chain acyl-CoA synthetase 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAP8]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.