Factsheet for Solyc08g008310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
mitochondrion 2
peroxisome 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g082280.2.1	Tomato	nucleus, plastid	84.09	76.29
Bra013735.1-P	Field mustard	peroxisome	75.88	72.71
Bra033159.1-P	Field mustard	peroxisome	73.37	72.52
VIT_02s0025g01410.t01	Wine grape	peroxisome	78.22	70.54
KRH77642	Soybean	endoplasmic reticulum	76.55	68.11
CDY47618	Canola	peroxisome	75.88	67.92
KRH27846	Soybean	peroxisome	75.38	67.87
CDY03515	Canola	peroxisome	75.71	67.77
AT4G23850.1	Thale cress	peroxisome	74.71	66.97
KRH60037	Soybean	peroxisome	73.53	66.02
AT4G11030.1	Thale cress	peroxisome	72.7	65.17
CDX86825	Canola	peroxisome	72.53	65.02
Bra035259.1-P	Field mustard	peroxisome	72.53	65.02
KXG27302	Sorghum	cytosol	5.86	64.81
CDY25270	Canola	peroxisome	70.35	63.73
CDX94232	Canola	peroxisome	70.35	63.54
AT1G64400.1	Thale cress	cytosol, peroxisome, plastid	69.18	62.11
Solyc01g095750.2.1	Tomato	peroxisome	67.17	60.67
KRG94065	Soybean	vacuole	18.43	60.11
CDY40856	Canola	peroxisome	72.36	58.94
CDY46530	Canola	peroxisome	70.52	53.56
KRH41306	Soybean	peroxisome	22.78	53.12
Solyc01g109180.2.1	Tomato	nucleus	57.45	52.05
Bra027700.1-P	Field mustard	peroxisome	70.69	51.09
CDY64879	Canola	peroxisome	70.69	43.96
PGSC0003DMT400014954	Potato	cytosol	7.87	40.52
Solyc09g075790.2.1	Tomato	peroxisome	37.52	35.67
Solyc01g099100.2.1	Tomato	plastid	41.54	35.63
Solyc09g075770.1.1	Tomato	peroxisome	41.21	35.24
Solyc11g018580.1.1	Tomato	plastid	32.83	32.13
Solyc07g045290.2.1	Tomato	plastid	35.68	29.34
Solyc12g009040.1.1	Tomato	plastid	34.67	28.83
Solyc09g092450.2.1	Tomato	plastid	26.47	21.85

Protein Annotations

EnsemblPlants:Solyc08g008310.2.1	EnsemblPlantsGene:Solyc08g008310.2	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF9	PFAM:PF00501
ScanProsite:PS00455	SUPFAM:SSF56801	UniParc:UPI000276AC6E	UniProt:K4CIW5	MapMan:50.6.2	:

Description

No Description!

Coordinates

chr8:-:2733245..2745937

Molecular Weight (calculated)

66540.5 Da

IEP (calculated)

7.420

GRAVY (calculated)

-0.106

Length

597 amino acids

Sequence
(BLAST)

001: MLGHRKIVDG KPGKYVWKTY KEVYDIVIKV GNSIRNCGVE KGGKCGIFGA NCAEWIISME ACNAHGLYCV PLYDTLGAGA VEFIISHAEV AIAFVEEKKV
101: PELLKTFPNA AKYLKTVVSF GEVTPQQKEE IEKFGVSLYS WDEFLQVGSK NQYDLPLKEK TDICTIMYTS GTTGEPKGVM ISNNSIVTLI AGVKRFLESV
201: NEALTMSDVY LSYLPLAHIF DRAIEECFIR HGASIGFWRG DVKLLTEDLG ELKPTVFCAV PRVLDRIYSG LQQKISSGGR LRSTLFNIAY ARKLQYLKDG
301: CKYHEASPIS DKVVFSKVRD GLGGKVRLIL SGAAPLSSHV EAFLRVVACA HVLQGYGLTE TCAGTFVSLP NQFDMLGTVG PPVPNVDVCL VSVPEMEYDA
401: LSSTPRGEIC VRGDTLFSGY YKREDLTKEV LIDGWFHTGD IGEWQPNGSL KIIDRMKNIF KLSQGEYVAV ENLENVFGNN PVIESVWVYG SSFESFLVAV
501: VNPSKQQVEK WAKQNSLSGD FNSLCENSKV KEHILGELTK VGKEKKLKGF EFIKALHLDP VPFDMERDLL TPTFKKKRPQ LLKYYKDVID TMYKDAK

Best Arabidopsis Sequence Match ( AT4G23850.1 )
(BLAST)

001: MSQQKKYIFQ VEEGKEGSDG RPSVGPVYRS IFAKDGFPDP IEGMDSCWDV FRMSVEKYPN NPMLGRREIV DGKPGKYVWQ TYQEVYDIVM KLGNSLRSVG
101: VKDEAKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA DAVEFIISHS EVSIVFVEEK KISELFKTCP NSTEYMKTVV SFGGVSREQK EEAETFGLVI
201: YAWDEFLKLG EGKQYDLPIK KKSDICTIMY TSGTTGDPKG VMISNESIVT LIAGVIRLLK SANEALTVKD VYLSYLPLAH IFDRVIEECF IQHGAAIGFW
301: RGDVKLLIED LAELKPTIFC AVPRVLDRVY SGLQKKLSDG GFLKKFIFDS AFSYKFGYMK KGQSHVEASP LFDKLVFSKV KQGLGGNVRI ILSGAAPLAS
401: HVESFLRVVA CCHVLQGYGL TESCAGTFVS LPDELGMLGT VGPPVPNVDI RLESVPEMEY DALASTARGE ICIRGKTLFS GYYKREDLTK EVLIDGWLHT
501: GDVGEWQPDG SMKIIDRKKN IFKLSQGEYV AVENIENIYG EVQAVDSVWV YGNSFESFLI AIANPNQHIL ERWAAENGVS GDYDALCQNE KAKEFILGEL
601: VKMAKEKKMK GFEIIKAIHL DPVPFDMERD LLTPTFKKKR PQLLKYYQSV IDEMYKTINA KFASRG

Arabidopsis Description

LACS4Long chain acyl-CoA synthetase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0A0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.