Factsheet for VIT_02s0025g01410.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
peroxisome 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27846	Soybean	peroxisome	80.66	80.54
KRH77642	Soybean	endoplasmic reticulum	80.82	79.73
Solyc08g082280.2.1	Tomato	nucleus, plastid	79.15	79.64
GSMUA_Achr3P32060_001	Banana	peroxisome	78.55	79.39
Solyc08g008310.2.1	Tomato	peroxisome	70.54	78.22
KXG27302	Sorghum	cytosol	6.34	77.78
TraesCS3D01G237900.1	Wheat	peroxisome	76.74	77.2
TraesCS3B01G266100.1	Wheat	golgi	76.74	77.2
Zm00001d044016_P001	Maize	mitochondrion	76.28	77.1
HORVU3Hr1G059140.1	Barley	peroxisome	76.59	77.05
Bra013735.1-P	Field mustard	peroxisome	72.51	77.05
GSMUA_Achr6P14370_001	Banana	peroxisome	75.53	76.34
CDY47618	Canola	peroxisome	76.74	76.16
CDY03515	Canola	peroxisome	76.59	76.01
AT4G23850.1	Thale cress	peroxisome	76.44	75.98
KRH60037	Soybean	peroxisome	75.38	75.04
TraesCS3A01G237700.3	Wheat	peroxisome	75.68	74.66
CDX86825	Canola	peroxisome	74.62	74.17
Bra035259.1-P	Field mustard	peroxisome	74.62	74.17
Os01t0681200-01	Rice	plasma membrane	74.32	73.98
Zm00001d043851_P001	Maize	mitochondrion	74.02	73.8
Bra033159.1-P	Field mustard	peroxisome	67.07	73.51
AT4G11030.1	Thale cress	peroxisome	73.56	73.12
TraesCS5B01G147300.1	Wheat	peroxisome	73.11	73.11
TraesCS5A01G148700.1	Wheat	peroxisome	73.56	73.01
TraesCS5D01G144200.2	Wheat	peroxisome	73.56	73.01
HORVU5Hr1G046950.26	Barley	peroxisome	73.72	71.66
PGSC0003DMT400014954	Potato	cytosol	12.54	71.55
CDY25270	Canola	peroxisome	70.24	70.56
CDX94232	Canola	peroxisome	70.24	70.35
Os01t0655800-01	Rice	plasma membrane	72.21	70.29
AT1G64400.1	Thale cress	cytosol, peroxisome, plastid	70.24	69.92
Os06t0158000-01	Rice	plasma membrane	63.44	68.29
TraesCS7D01G110700.1	Wheat	peroxisome	66.01	67.23
CDY40856	Canola	peroxisome	74.32	67.12
TraesCS7B01G012700.1	Wheat	peroxisome	65.41	66.62
TraesCS7A01G115900.1	Wheat	peroxisome	63.44	66.56
KRH41306	Soybean	peroxisome	25.68	66.41
Zm00001d045295_P001	Maize	extracellular	66.92	65.63
HORVU7Hr1G024350.1	Barley	endoplasmic reticulum, vacuole	65.71	60.92
KRG94065	Soybean	vacuole	16.77	60.66
CDY46530	Canola	peroxisome	71.75	60.43
VIT_03s0063g01880.t01	Wine grape	peroxisome	59.21	59.48
Bra027700.1-P	Field mustard	peroxisome	72.21	57.87
CDY64879	Canola	peroxisome	72.21	49.79
VIT_07s0005g01790.t01	Wine grape	peroxisome	48.04	48.04
VIT_14s0128g00720.t01	Wine grape	peroxisome	34.59	36.18
VIT_05s0020g03080.t01	Wine grape	peroxisome	38.07	36.15
VIT_18s0001g02810.t01	Wine grape	vacuole	30.82	29.27
VIT_12s0057g01270.t01	Wine grape	peroxisome	31.27	28.79
VIT_08s0032g00050.t01	Wine grape	plastid	23.72	21.51

Protein Annotations

EntrezGene:100265062	wikigene:100265062	Gene3D:3.40.50.12780	MapMan:50.6.2	EMBL:AM449986	InterPro:AMP-binding_CS
InterPro:AMP-dep_Synth/Lig	ProteinID:CAN67631	ProteinID:CAN67631.1	ProteinID:CBI34479	ProteinID:CBI34479.3	UniProt:D7TVF4
EMBL:FN596251	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	EntrezGene:LOC100265062
wikigene:LOC100265062	PFAM:PF00501	ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF9	SUPFAM:SSF56801
TIGR:TC61355	UniParc:UPI00015CC4B0	ArrayExpress:VIT_02s0025g01410	EnsemblPlantsGene:VIT_02s0025g01410	EnsemblPlants:VIT_02s0025g01410.t01	unigene:Vvi.10282
RefSeq:XP_002270385	RefSeq:XP_002270385.1	:	:	:	:

Description

No Description!

Coordinates

chr2:-:1349835..1359227

Molecular Weight (calculated)

74273.9 Da

IEP (calculated)

7.116

GRAVY (calculated)

-0.176

Length

662 amino acids

Sequence
(BLAST)

001: MAQKRFIIEM EKAKEAKDGR PSIGPVYRSS FARDGFPKPI EGMESCWDVF RLAVEKYPGN RMLGQREIVN GKAGKYVWLT YKEVYDKVMK VGNSIRSCGV
101: NEGGRCGIYG ANSAEWIMSM EACNAHGLYC VPLYDTLGAG AVEFIICHSE LSIVFVEEKK IPEVLKTFPN TTEYLKTIVS FGKVTPEQRE EVEKFGLAIY
201: YWEEFLQLGD DKKFDLPLTK KNDICTIMYT SGTTGDPKGV MISNESIVTL IAGVKRLLQS VNEELNEKDV FISYLPLAHI FDRVIEELFI SHGASIGFWR
301: GDVKLLVEDI GELKPTIFCA VPRVLDRIYS GLKQKISAGG LLRNTLFNIA YKYKQYNLWK GVKTLEAAPI CDKIVFGKVK QGLGGNVRLI LSGAAPLSTH
401: VEAYLRVVTC AHVLQGYGLT ETCAGTFVSL PNEISMLGTV GPPVPNVDVC LESVPEMGYD ALSSTPRGEI CIRGKTLFSG YYKREDLTKE VLVDGWFHTG
501: DVGEWQPDGS MKIIDRKKNI FKLSQGEYVA VENLENIYGL VSDIDSIWIY GNSFESFLVA VANPNQQALE RWAKENNISG DFDSLCENPK AKEYILGELS
601: KIGKEKKLKG FEFVKAVHLD PVPFDMERDL ITPTYKKKRP QLLKYYQNVI DKMYKSINKP SA

Best Arabidopsis Sequence Match ( AT4G23850.1 )
(BLAST)

001: MSQQKKYIFQ VEEGKEGSDG RPSVGPVYRS IFAKDGFPDP IEGMDSCWDV FRMSVEKYPN NPMLGRREIV DGKPGKYVWQ TYQEVYDIVM KLGNSLRSVG
101: VKDEAKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA DAVEFIISHS EVSIVFVEEK KISELFKTCP NSTEYMKTVV SFGGVSREQK EEAETFGLVI
201: YAWDEFLKLG EGKQYDLPIK KKSDICTIMY TSGTTGDPKG VMISNESIVT LIAGVIRLLK SANEALTVKD VYLSYLPLAH IFDRVIEECF IQHGAAIGFW
301: RGDVKLLIED LAELKPTIFC AVPRVLDRVY SGLQKKLSDG GFLKKFIFDS AFSYKFGYMK KGQSHVEASP LFDKLVFSKV KQGLGGNVRI ILSGAAPLAS
401: HVESFLRVVA CCHVLQGYGL TESCAGTFVS LPDELGMLGT VGPPVPNVDI RLESVPEMEY DALASTARGE ICIRGKTLFS GYYKREDLTK EVLIDGWLHT
501: GDVGEWQPDG SMKIIDRKKN IFKLSQGEYV AVENIENIYG EVQAVDSVWV YGNSFESFLI AIANPNQHIL ERWAAENGVS GDYDALCQNE KAKEFILGEL
601: VKMAKEKKMK GFEIIKAIHL DPVPFDMERD LLTPTFKKKR PQLLKYYQSV IDEMYKTINA KFASRG

Arabidopsis Description

LACS4Long chain acyl-CoA synthetase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0A0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.