Factsheet for Zm00001d045295_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75859	Sorghum	peroxisome	89.78	93.37
KXG19348	Sorghum	peroxisome	88.59	92.14
Os06t0158000-01	Rice	plasma membrane	75.41	82.76
TraesCS7D01G110700.1	Wheat	peroxisome	77.78	80.77
TraesCS7B01G012700.1	Wheat	peroxisome	77.33	80.31
TraesCS7A01G115900.1	Wheat	peroxisome	74.22	79.4
HORVU7Hr1G024350.1	Barley	endoplasmic reticulum, vacuole	76.89	72.69
Zm00001d043851_P001	Maize	mitochondrion	67.26	68.37
Zm00001d044016_P001	Maize	mitochondrion	65.48	67.48
VIT_02s0025g01410.t01	Wine grape	peroxisome	65.63	66.92
Bra013735.1-P	Field mustard	peroxisome	61.04	66.13
KRH27846	Soybean	peroxisome	64.15	65.31
KRH77642	Soybean	endoplasmic reticulum	64.3	64.68
AT4G23850.1	Thale cress	peroxisome	63.56	64.41
Bra033159.1-P	Field mustard	peroxisome	57.63	64.4
PGSC0003DMT400000613	Potato	peroxisome	62.52	64.33
Bra035259.1-P	Field mustard	peroxisome	63.26	64.11
CDX86825	Canola	peroxisome	63.26	64.11
CDY47618	Canola	peroxisome	63.26	64.02
CDY03515	Canola	peroxisome	63.26	64.02
KRH60037	Soybean	peroxisome	62.81	63.76
Solyc01g095750.2.1	Tomato	peroxisome	62.37	63.69
AT4G11030.1	Thale cress	peroxisome	62.22	63.06
AT1G64400.1	Thale cress	cytosol, peroxisome, plastid	61.78	62.71
CDX94232	Canola	peroxisome	58.96	60.21
CDY25270	Canola	peroxisome	58.67	60.09
CDY40856	Canola	peroxisome	63.41	58.39
KRG94065	Soybean	vacuole	15.41	56.83
Zm00001d053127_P005	Maize	mitochondrion	53.63	54.52
CDY46530	Canola	peroxisome	62.96	54.07
KRH41306	Soybean	peroxisome	20.15	53.12
Bra027700.1-P	Field mustard	peroxisome	63.41	51.82
Zm00001d010943_P001	Maize	peroxisome	10.52	50.35
Zm00001d024723_P001	Maize	peroxisome	49.33	49.7
CDY64879	Canola	peroxisome	63.41	44.58
Zm00001d023238_P002	Maize	plasma membrane	37.63	36.76
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	37.33	36.21
Zm00001d023538_P002	Maize	plastid	31.7	30.66
Zm00001d053009_P009	Maize	plastid	31.56	30.52
Zm00001d005019_P004	Maize	plasma membrane	30.81	28.65
Zm00001d052399_P007	Maize	peroxisome	30.52	28.37
Zm00001d034832_P006	Maize	plastid	23.41	19.8

Protein Annotations

EnsemblPlants:Zm00001d045295_P001	EnsemblPlants:Zm00001d045295_T001	EnsemblPlantsGene:Zm00001d045295	Gene3D:3.40.50.12780	Gene3D:3.40.50.980	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272
PANTHER:PTHR43272:SF18	PFAM:PF00501	ProteinID:AQL01991.1	ScanProsite:PS00455	SUPFAM:SSF56801	UniParc:UPI000844FAB8
UniProt:A0A1D6NV39	MapMan:50.6.2	:	:	:	:

Description

ACS-like protein%3B Putative AMP-dependent synthetase and ligase superfamily protein

Coordinates

chr9:-:18154086..18160890

Molecular Weight (calculated)

75079.9 Da

IEP (calculated)

6.982

GRAVY (calculated)

-0.106

Length

675 amino acids

Sequence
(BLAST)

001: MKHLVEVEAA TATAGPAYRN ARAKDGLLQA PAGLHSCWDI FRASVEKYPD NQMLGRRRVV DGKAGEYTWW TYKEVYDVVM KLAASMDKSG IKQGESCGIY
101: GANCPEWIVS MEACNALGIC CVPLYDSLGN KQMTRIGRHC LPLIPILCCV DSYVGAGAVE FIICHAEIQI AFVEEKKITE LLKTCHATSK YLKTVISFGG
201: VTNDHKDEAK KHGLSIFSWD EFLVMGGSHN FDLPEKKRSD ICTIMYTSGT TGDPKGVMLS NESLLVNIAG PDSVLQYLGE AFDQDDVYLS YLPLAHVFDR
301: MFEEVFIYHG SKIGFWRGDV KLLVDDIAAL KPTVFCAVPR VLDRIYSGLT TRISSGGMLK KTLFNIAYKM KLGNMRKGIK HEKAAPFFDK LVFSKVKERL
401: GGKLRVIVSG GAPLAVPVEE FLRVVTCAYV VQGYGLTETC AGSIVSIPNE HSMLGTVGPP VQHIDVRLES VPEMGYDALS SVPRGEICIR GSVLFSGYYK
501: REDLEQEVMI DGWFHTGDIG EWQPDGSLKV IDRKKNIFKL SQGEYVAVEN LENVYGVLQD IDSIWVYGNS FESSLVAVAN PNQQALERWA EQNGVTGSFA
601: ELCEHPRARE HILAELTKIA KDKKLKGFEA IKAVHLDPLP FDIERDLITP TYKKKRPQML KHYQGVIDAL YKGMK

Best Arabidopsis Sequence Match ( AT4G23850.1 )
(BLAST)

001: MSQQKKYIFQ VEEGKEGSDG RPSVGPVYRS IFAKDGFPDP IEGMDSCWDV FRMSVEKYPN NPMLGRREIV DGKPGKYVWQ TYQEVYDIVM KLGNSLRSVG
101: VKDEAKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA DAVEFIISHS EVSIVFVEEK KISELFKTCP NSTEYMKTVV SFGGVSREQK EEAETFGLVI
201: YAWDEFLKLG EGKQYDLPIK KKSDICTIMY TSGTTGDPKG VMISNESIVT LIAGVIRLLK SANEALTVKD VYLSYLPLAH IFDRVIEECF IQHGAAIGFW
301: RGDVKLLIED LAELKPTIFC AVPRVLDRVY SGLQKKLSDG GFLKKFIFDS AFSYKFGYMK KGQSHVEASP LFDKLVFSKV KQGLGGNVRI ILSGAAPLAS
401: HVESFLRVVA CCHVLQGYGL TESCAGTFVS LPDELGMLGT VGPPVPNVDI RLESVPEMEY DALASTARGE ICIRGKTLFS GYYKREDLTK EVLIDGWLHT
501: GDVGEWQPDG SMKIIDRKKN IFKLSQGEYV AVENIENIYG EVQAVDSVWV YGNSFESFLI AIANPNQHIL ERWAAENGVS GDYDALCQNE KAKEFILGEL
601: VKMAKEKKMK GFEIIKAIHL DPVPFDMERD LLTPTFKKKR PQLLKYYQSV IDEMYKTINA KFASRG

Arabidopsis Description

LACS4Long chain acyl-CoA synthetase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0A0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.