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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 2
  • peroxisome 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, peroxisome
BaCelLo:cytosol
MultiLoc:peroxisome
Plant-mPloc:peroxisome
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH27846 Soybean peroxisome 92.55 93.67
VIT_02s0025g01410.t01 Wine grape peroxisome 79.73 80.82
KRH60037 Soybean peroxisome 79.88 80.6
Solyc08g082280.2.1 Tomato nucleus, plastid 76.9 78.42
Solyc08g008310.2.1 Tomato peroxisome 68.11 76.55
Bra013735.1-P Field mustard peroxisome 69.45 74.8
CDY47618 Canola peroxisome 74.22 74.66
GSMUA_Achr3P32060_001 Banana peroxisome 72.88 74.66
CDY03515 Canola peroxisome 74.07 74.51
AT4G23850.1 Thale cress peroxisome 73.32 73.87
HORVU3Hr1G059140.1 Barley peroxisome 72.43 73.86
TraesCS3B01G266100.1 Wheat golgi 72.28 73.71
TraesCS3D01G237900.1 Wheat peroxisome 72.28 73.71
AT4G11030.1 Thale cress peroxisome 72.13 72.67
Zm00001d044016_P001 Maize mitochondrion 70.94 72.67
KRH41306 Soybean peroxisome 27.72 72.66
GSMUA_Achr6P14370_001 Banana peroxisome 70.79 72.52
CDX86825 Canola peroxisome 71.68 72.22
Bra035259.1-P Field mustard peroxisome 71.68 72.22
Bra033159.1-P Field mustard peroxisome 64.98 72.19
TraesCS3A01G237700.3 Wheat peroxisome 71.98 71.98
TraesCS5B01G147300.1 Wheat peroxisome 70.94 71.9
TraesCS5D01G144200.2 Wheat peroxisome 71.39 71.81
TraesCS5A01G148700.1 Wheat peroxisome 71.39 71.81
Zm00001d043851_P001 Maize mitochondrion 70.79 71.54
AT1G64400.1 Thale cress cytosol, peroxisome, plastid 70.79 71.43
Os01t0681200-01 Rice plasma membrane 70.79 71.43
PGSC0003DMT400014954 Potato cytosol 12.22 70.69
HORVU5Hr1G046950.26 Barley peroxisome 71.09 70.04
KRG94065 Soybean vacuole 19.08 69.95
CDY25270 Canola peroxisome 67.96 69.2
CDX94232 Canola peroxisome 67.96 68.99
Os01t0655800-01 Rice plasma membrane 67.81 66.91
Os06t0158000-01 Rice plasma membrane 61.1 66.67
TraesCS7D01G110700.1 Wheat peroxisome 64.08 66.15
TraesCS7A01G115900.1 Wheat peroxisome 61.85 65.77
TraesCS7B01G012700.1 Wheat peroxisome 63.64 65.69
CDY40856 Canola peroxisome 71.68 65.62
Zm00001d045295_P001 Maize extracellular 64.68 64.3
KXG27302 Sorghum cytosol 5.07 62.96
CDY46530 Canola peroxisome 72.13 61.58
HORVU7Hr1G024350.1 Barley endoplasmic reticulum, vacuole 63.93 60.08
KRH48841 Soybean peroxisome 19.37 59.36
Bra027700.1-P Field mustard peroxisome 72.58 58.96
KRH29538 Soybean peroxisome 55.29 56.55
KRG89197 Soybean peroxisome 55.59 56.52
KRH24533 Soybean peroxisome 55.14 56.4
KRH49531 Soybean peroxisome 55.44 56.36
CDY64879 Canola peroxisome 72.58 50.73
KRH31765 Soybean peroxisome 49.48 50.3
KRH69184 Soybean peroxisome 49.48 50.3
KRH68292 Soybean endoplasmic reticulum 48.88 49.55
KRG96554 Soybean peroxisome 48.58 49.24
KRH66241 Soybean peroxisome 22.8 43.47
KRH57847 Soybean cytosol 5.51 42.05
KRH26020 Soybean cytosol 5.37 40.45
KRG91264 Soybean peroxisome 37.11 35.67
KRH35544 Soybean endoplasmic reticulum, mitochondrion 36.36 35.06
KRG89997 Soybean endoplasmic reticulum 33.53 33.38
KRH53234 Soybean mitochondrion 32.79 31.7
KRG89995 Soybean endoplasmic reticulum, mitochondrion 33.83 31.31
KRH17725 Soybean peroxisome 33.83 31.31
KRH18736 Soybean peroxisome, plastid 32.04 30.89
KRH16338 Soybean plastid, vacuole 28.32 29.37
KRH31560 Soybean plastid 23.84 22.22
KRH13185 Soybean cytosol 19.52 20.96
KRH58837 Soybean plastid 22.8 20.87
Protein Annotations
EMBL:ACUP02000681EnsemblPlants:KRH77642EnsemblPlantsGene:GLYMA_01G225200Gene3D:3.40.50.12780GO:GO:0003674GO:GO:0003824
GO:GO:0008150GO:GO:0008152InterPro:AMP-binding_CSInterPro:AMP-dep_Synth/LigPANTHER:PTHR43272PANTHER:PTHR43272:SF9
PFAM:PF00501ProteinID:KRH77642ProteinID:KRH77642.1ScanProsite:PS00455SUPFAM:SSF56801UniParc:UPI00023BE762
UniProt:I1JAD1MapMan:50.6.2::::
Description
hypothetical protein
Coordinates
chr1:-:55393659..55402454
Molecular Weight (calculated)
75370.1 Da
IEP (calculated)
7.253
GRAVY (calculated)
-0.164
Length
671 amino acids
Sequence
(BLAST)
001: MAQKRFIIEV EKAKEASEGR PSRGPVYRSL FAKDGFPAPI QGLNSCWDVF RLSVEKYPSN PMLGRREIVD GKPGKYKWLT YKEVYDQVMK VGNSIRSCGY
101: GEGVKCGIYG ANSAEWIMSM QACNAHGLYC VPLYDTLGAG AIEFIICHAE VSIAFAEEKK IPELLKTFPN ATKYLKTIVS FGKVTPEQKQ EVENSGLEIY
201: SWDEFLQVGQ NQSFDLPIKK RSDICTIMYT SGTTGDPKGV LISNESIITL LAGVKRLLES VNEQLTEKDV YISYLPLAHI FDRVIEETFI WHGASIGFWR
301: GDVKLLIEDV GELKPTIFCA VPRVLDRVYS GLTQKISSGG FLKKTLFNFA YSYKLNNMKK GLRHGEASPL LDKIVFDKVK QGLGGRVRLI LSGAAPLSAH
401: VEGYLRVVTC AHVLQGYGLT ETCAGTFVSL PNEIEMLGTV GPPVPNVDVC LESVPEMGYD ALASTPRGEI CVKGKTLFAG YYKREDLTKE VLIDEWFHTG
501: DIGEWQPNGS MKIIDRKKNI FKLSQGEYVA VENLENIYGQ VSSIESIWVY GNSFEAFLVA VVNPSKQALE HWAQENGISM DFNSLCEDAR AKSYIIEELS
601: KIAKEKKLKG FEFIKAVHLD SIPFDMERDL ITPTYKKKRP QLLKYYQHFY FVHRMPLTTC IRVEVNPVPE T
Best Arabidopsis Sequence Match ( AT4G23850.1 )
(BLAST)
001: MSQQKKYIFQ VEEGKEGSDG RPSVGPVYRS IFAKDGFPDP IEGMDSCWDV FRMSVEKYPN NPMLGRREIV DGKPGKYVWQ TYQEVYDIVM KLGNSLRSVG
101: VKDEAKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA DAVEFIISHS EVSIVFVEEK KISELFKTCP NSTEYMKTVV SFGGVSREQK EEAETFGLVI
201: YAWDEFLKLG EGKQYDLPIK KKSDICTIMY TSGTTGDPKG VMISNESIVT LIAGVIRLLK SANEALTVKD VYLSYLPLAH IFDRVIEECF IQHGAAIGFW
301: RGDVKLLIED LAELKPTIFC AVPRVLDRVY SGLQKKLSDG GFLKKFIFDS AFSYKFGYMK KGQSHVEASP LFDKLVFSKV KQGLGGNVRI ILSGAAPLAS
401: HVESFLRVVA CCHVLQGYGL TESCAGTFVS LPDELGMLGT VGPPVPNVDI RLESVPEMEY DALASTARGE ICIRGKTLFS GYYKREDLTK EVLIDGWLHT
501: GDVGEWQPDG SMKIIDRKKN IFKLSQGEYV AVENIENIYG EVQAVDSVWV YGNSFESFLI AIANPNQHIL ERWAAENGVS GDYDALCQNE KAKEFILGEL
601: VKMAKEKKMK GFEIIKAIHL DPVPFDMERD LLTPTFKKKR PQLLKYYQSV IDEMYKTINA KFASRG
Arabidopsis Description
LACS4Long chain acyl-CoA synthetase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0A0]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.