CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

plastid 1
cytosol 2
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91264	Soybean	peroxisome	96.55	96.28
VIT_05s0020g03080.t01	Wine grape	peroxisome	81.18	81.06
AT3G05970.1	Thale cress	plastid	77.44	76.89
Bra020793.1-P	Field mustard	plastid	68.82	76.15
CDX74115	Canola	plastid	76.01	76.01
CDY49993	Canola	mitochondrion	76.01	76.01
Bra001177.1-P	Field mustard	plastid	75.86	75.86
CDY27725	Canola	plastid	74.57	75.55
CDY05217	Canola	plastid	74.28	75.25
CDX92843	Canola	peroxisome	22.41	72.9
EES15543	Sorghum	peroxisome	71.12	72.58
Os12t0143900-01	Rice	peroxisome	73.71	72.56
Zm00001d023238_P002	Maize	plasma membrane	71.84	72.36
TraesCS4A01G184900.2	Wheat	peroxisome	71.84	71.84
TraesCS4D01G128700.3	Wheat	mitochondrion	71.55	71.55
TraesCS4B01G133700.3	Wheat	peroxisome	71.55	71.55
TraesCS5B01G131800.3	Wheat	peroxisome	72.13	71.51
TraesCS5D01G141300.1	Wheat	peroxisome	71.55	70.94
TraesCS5A01G133200.2	Wheat	peroxisome	71.55	70.94
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	70.83	70.83
KXG27718	Sorghum	peroxisome	70.83	70.73
Os11t0147000-01	Rice	peroxisome	71.55	70.24
HORVU5Hr1G040740.17	Barley	peroxisome	70.26	68.39
HORVU4Hr1G025820.9	Barley	peroxisome, plastid	69.97	64.93
PGSC0003DMT400063438	Potato	peroxisome	7.33	55.43
CDY65251	Canola	peroxisome	18.25	54.27
KRH13185	Soybean	cytosol	47.84	53.28
KRH48841	Soybean	peroxisome	14.94	47.49
KRH49531	Soybean	peroxisome	38.22	40.3
KRG89197	Soybean	peroxisome	37.79	39.85
KRH29538	Soybean	peroxisome	37.5	39.79
KRH24533	Soybean	peroxisome	37.36	39.63
KRH57847	Soybean	cytosol	4.89	38.64
KRH60037	Soybean	peroxisome	36.49	38.2
KRH69184	Soybean	peroxisome	35.78	37.73
KRH31765	Soybean	peroxisome	35.63	37.58
KRH27846	Soybean	peroxisome	34.91	36.65
KRH68292	Soybean	endoplasmic reticulum	34.77	36.56
KRH77642	Soybean	endoplasmic reticulum	35.06	36.36
KRG96554	Soybean	peroxisome	34.48	36.25
KRH26020	Soybean	cytosol	4.6	35.96
KRH66241	Soybean	peroxisome	16.67	32.95
KRG94065	Soybean	vacuole	8.62	32.79
KRH53234	Soybean	mitochondrion	32.18	32.28
KRG89997	Soybean	endoplasmic reticulum	30.89	31.9
KRH41306	Soybean	peroxisome	11.49	31.25
KRH18736	Soybean	peroxisome, plastid	30.75	30.75
KRG89995	Soybean	endoplasmic reticulum, mitochondrion	31.61	30.34
KRH17725	Soybean	peroxisome	31.61	30.34
KRH16338	Soybean	plastid, vacuole	27.3	29.37
GSMUA_AchrUn_...	Banana	peroxisome	4.45	24.6
KRH31560	Soybean	plastid	22.84	22.08
KRH58837	Soybean	plastid	22.84	21.69

Protein Annotations

EntrezGene:100785229	Gene3D:3.40.50.12780	MapMan:5.7.3.1	EMBL:ACUP02006688	InterPro:AMP-bd_C	InterPro:AMP-binding_CS
InterPro:AMP-dep_Synth/Lig	EnsemblPlantsGene:GLYMA_10G249700	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
UniProt:I1LE62	EnsemblPlants:KRH35544	ProteinID:KRH35544	ProteinID:KRH35544.1	PFAM:PF00501	PFAM:PF13193
ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF17	SUPFAM:SSF56801	UniParc:UPI000233CC39	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:47786172..47795006

Molecular Weight (calculated)

76884.3 Da

IEP (calculated)

7.849

GRAVY (calculated)

-0.124

Length

696 amino acids

Sequence
(BLAST)

001: MDHTPAAQRR LKAIHAHLTA TADESPSHLR SNPTAGEFFS EQGYSVVLPE KLQTGKWNVY RSVRSPLQLV TKFPNHPEIG TLHDNFVRSV DTFRDYKYLG
101: TRVRVDGTVG EYKWITYGEA GTARSAIGSG LIYHGIEKGS SIGLYFINRP EWLIVDHACS SYSFVSVPLY DTLGPDAVKY IVSHAAVQVI FCVPQTLNLL
201: LSYLSDIPTV RLIVVVGGMD DQIPLVPSST GVQVITYSKL LNQGRSNLQL FCPPKPDDIA TICYTSGTTG TPKGAILTHG NFIASVAGST RDQKFGPSDV
301: YISYLPLAHI YERANQVMTV HFGIAVGFYQ GDSMKLMDDI AALRPTVFCS VPRLYNRIYA GIINAVKTSG GLKERLFNAA YNAKRQALLH GKNPSPMWDR
401: LVFNKIKEKL GGRVRFMASG ASPLSPDIME FLKICFGCRV TEGYGMTEST CIISFIDEGD KLGGHVGSPN LACEIKLVDV PEMNYTSDDQ PNPRGEICVR
501: GPIVFRGYHK DEAQTRDVID EDGWLHTGDI GTWLPGGRLK IIDRKKNIFK LAQGEYIAPE KIENVYAKCK FVAQCFVYGD SLNSSLVAVV SVDHDNLKAW
601: AASEGIMYND LAQLCNDSKV RAAVLAEMDA AGRDAQLRGF EFVKAVTLVL EPFTLENGLL TPTFKVKRPQ AKEYFAKAIS DMYNELSRTD VSQKTL

Best Arabidopsis Sequence Match ( AT3G05970.1 )
(BLAST)

001: MDSSSSSSSA AARRRINAIH SHLVTSSRSS PLLRSNPTAG EFCLDNGYSV VLPEKLNTGS WNVYRSAKSP FKLVSRFPDH PDIATLHDNF EHAVHDFRDY
101: KYLGTRVRVD GTVGDYKWMT YGEAGTARTA LGSGLVHHGI PMGSSVGIYF INRPEWLIVD HACSSYSYVS VPLYDTLGPD AVKFIVNHAT VQAIFCVAET
201: LNSLLSCLSE MPSVRLVVVV GGLIESLPSL PSSSGVKVVS YSVLLNQGRS NPQRFFPPKP DDVATICYTS GTTGTPKGVV LTHANLIANV AGSSFSVKFF
301: SSDVYISYLP LAHIYERANQ ILTVYFGVAV GFYQGDNMKL LDDLAALRPT VFSSVPRLYN RIYAGIINAV KTSGGLKERL FNAAYNAKKQ ALLNGKSASP
401: IWDRLVFNKI KDRLGGRVRF MTSGASPLSP EVMEFLKVCF GGRVTEGYGM TETSCVISGM DEGDNLTGHV GSPNPACEVK LVDVPEMNYT SADQPHPRGE
501: ICVRGPIIFT GYYKDEIQTK EVIDEDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY AKCKFVGQCF IYGDSFNSSL VAVVSVDPDV
601: LKSWAASEGI KGGDLRELCN NPRVKAAVLS DMDTVGREAQ LRGFEFAKAV TLVLEPFTLE NGLLTPTFKI KRPQAKEYFA EAITNMYKEL GASDPSANRG
701: L

Arabidopsis Description

LACS6Long chain acyl-CoA synthetase 6, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.