Factsheet for Bra020793.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27725	Canola	plastid	99.68	91.27
Bra001177.1-P	Field mustard	plastid	92.53	83.62
VIT_05s0020g03080.t01	Wine grape	peroxisome	77.58	70.01
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	76.15	68.82
KRG91264	Soybean	peroxisome	76.15	68.62
Bra009951.1-P	Field mustard	peroxisome	72.34	65.19
EES15543	Sorghum	peroxisome	70.59	65.1
TraesCS4B01G133700.3	Wheat	peroxisome	72.02	65.09
TraesCS4D01G128700.3	Wheat	mitochondrion	71.86	64.94
TraesCS4A01G184900.2	Wheat	peroxisome	71.86	64.94
Zm00001d023238_P002	Maize	plasma membrane	71.22	64.83
TraesCS5A01G133200.2	Wheat	peroxisome	71.86	64.39
TraesCS5B01G131800.3	Wheat	peroxisome	71.86	64.39
TraesCS5D01G141300.1	Wheat	peroxisome	71.7	64.25
Os12t0143900-01	Rice	peroxisome	72.18	64.22
Os11t0147000-01	Rice	peroxisome	71.22	63.19
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	69.48	62.79
KXG27718	Sorghum	peroxisome	69.32	62.55
HORVU5Hr1G040740.17	Barley	peroxisome	69.79	61.4
PGSC0003DMT400063438	Potato	peroxisome	8.9	60.87
HORVU4Hr1G025820.9	Barley	peroxisome, plastid	70.27	58.93
KRH13185	Soybean	cytosol	37.84	38.08
Bra013735.1-P	Field mustard	peroxisome	34.98	35.31
Bra033159.1-P	Field mustard	peroxisome	33.86	35.26
Bra021392.1-P	Field mustard	peroxisome	36.25	34.55
Bra035259.1-P	Field mustard	peroxisome	36.57	34.53
Bra032284.1-P	Field mustard	peroxisome	36.25	34.23
Bra004467.1-P	Field mustard	peroxisome	36.41	32.86
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	31.8	28.86
Bra013210.1-P	Field mustard	peroxisome	32.11	28.02
Bra027700.1-P	Field mustard	peroxisome	36.57	27.84
Bra001919.1-P	Field mustard	plastid	23.69	20.75
Bra032757.1-P	Field mustard	plastid	22.58	19.75

Protein Annotations

EnsemblPlants:Bra020793.1	EnsemblPlants:Bra020793.1-P	EnsemblPlantsGene:Bra020793	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF17
PFAM:PF00501	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801	UniParc:UPI0002545D7E	UniProt:M4DW99
MapMan:50.6.2	:	:	:	:	:

Description

AT3G05970 (E=1e-191) LACS6, ATLACS6 | LACS6 (long-chain acyl-CoA synthetase 6); long-chain-fatty-acid-CoA ligase

Coordinates

chrA02:-:23104059..23109029

Molecular Weight (calculated)

68995.6 Da

IEP (calculated)

7.896

GRAVY (calculated)

-0.167

Length

629 amino acids

Sequence
(BLAST)

001: MDSSSAARRR INSIHSHLVT SSRSSPLLRS NPTAGEFCLD NGYSVALPEK LSTGDWNVYR SARSPFKLVS RFPDHPDIAT LHDNFEHAVH DFRDYKYLGT
101: RVRVDGTVGD YKWMTYGEVG TARTAIGSGL VHHGITMGST VGIYFINRPE WLIVDHACSA YSYVSVPLYD TLGPDAVQFI VNHANVQAIF CVAETLNSLI
201: SGLSEMPSVR LVVVVGGLNE SLPSLPASAG VKVVSYSVLL NQGRSKPQPF VPPKPDDVAT ICYTSGTTGT PKDNMKLLDD LAALRPTVFS SVPRLYNRIY
301: DGINNAVKSS GGLKERLFNA AYNAKKQALL NGKNASGIWD RLVFNKIKDK LGGRVRFMTS GASPLSPEVM EFMKICFGAR VLEGYGMTET ACVISGMDEG
401: DNLIGHVGSP NPACEIKLVD VPEMNYTSAD QPNPRGEICV RGPIVFRGYY KDEVQTKEVV DEDGWLHTGD IGLWLPGGRL QIIDRKKNIF KLAQGEYIAP
501: EKIENVYAKC KFVGQCFIYG DSFNSSLVAV VSVDPDVLKS WAASQGIKHG DPRELCNNPR VKAAVVSDMD ALRGFEFAKA VTLVLEPFTL EKGLLTPTLK
601: IKRPQAKEYF AEAITNMYKE LAASDPTHR

Best Arabidopsis Sequence Match ( AT3G05970.1 )
(BLAST)

001: MDSSSSSSSA AARRRINAIH SHLVTSSRSS PLLRSNPTAG EFCLDNGYSV VLPEKLNTGS WNVYRSAKSP FKLVSRFPDH PDIATLHDNF EHAVHDFRDY
101: KYLGTRVRVD GTVGDYKWMT YGEAGTARTA LGSGLVHHGI PMGSSVGIYF INRPEWLIVD HACSSYSYVS VPLYDTLGPD AVKFIVNHAT VQAIFCVAET
201: LNSLLSCLSE MPSVRLVVVV GGLIESLPSL PSSSGVKVVS YSVLLNQGRS NPQRFFPPKP DDVATICYTS GTTGTPKGVV LTHANLIANV AGSSFSVKFF
301: SSDVYISYLP LAHIYERANQ ILTVYFGVAV GFYQGDNMKL LDDLAALRPT VFSSVPRLYN RIYAGIINAV KTSGGLKERL FNAAYNAKKQ ALLNGKSASP
401: IWDRLVFNKI KDRLGGRVRF MTSGASPLSP EVMEFLKVCF GGRVTEGYGM TETSCVISGM DEGDNLTGHV GSPNPACEVK LVDVPEMNYT SADQPHPRGE
501: ICVRGPIIFT GYYKDEIQTK EVIDEDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY AKCKFVGQCF IYGDSFNSSL VAVVSVDPDV
601: LKSWAASEGI KGGDLRELCN NPRVKAAVLS DMDTVGREAQ LRGFEFAKAV TLVLEPFTLE NGLLTPTFKI KRPQAKEYFA EAITNMYKEL GASDPSANRG
701: L

Arabidopsis Description

LACS6Long chain acyl-CoA synthetase 6, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.