Factsheet for Bra021392.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51419	Canola	peroxisome	100.0	100.0
AT2G47240.2	Thale cress	peroxisome	91.97	91.97
Bra004467.1-P	Field mustard	peroxisome	89.7	84.94
KRH68292	Soybean	endoplasmic reticulum	68.94	68.73
KRG96554	Soybean	peroxisome	68.48	68.28
KRH69184	Soybean	peroxisome	66.82	66.82
KRH31765	Soybean	peroxisome	66.21	66.21
VIT_07s0005g01790.t01	Wine grape	peroxisome	65.91	65.71
GSMUA_Achr8P10780_001	Banana	peroxisome	63.18	62.8
PGSC0003DMT400023374	Potato	peroxisome	62.73	62.63
KXG21217	Sorghum	peroxisome	62.42	61.49
TraesCS1B01G093600.1	Wheat	peroxisome	62.27	61.34
Zm00001d024723_P001	Maize	peroxisome	62.12	61.19
TraesCS1A01G075000.1	Wheat	golgi	61.97	61.04
TraesCS1D01G077600.1	Wheat	golgi	61.82	60.9
Os05t0132100-02	Rice	plasma membrane	61.21	60.39
KRH66241	Soybean	peroxisome	28.94	54.26
HORVU1Hr1G016200.16	Barley	peroxisome	62.12	52.56
Zm00001d010943_P001	Maize	peroxisome	11.06	51.77
Bra013735.1-P	Field mustard	peroxisome	46.36	49.12
Bra035259.1-P	Field mustard	peroxisome	48.94	48.5
Bra033159.1-P	Field mustard	peroxisome	43.94	48.01
Bra032284.1-P	Field mustard	peroxisome	44.55	44.14
Bra027700.1-P	Field mustard	peroxisome	50.15	40.07
Bra020793.1-P	Field mustard	plastid	34.55	36.25
Bra001177.1-P	Field mustard	plastid	37.42	35.49
Bra009951.1-P	Field mustard	peroxisome	36.06	34.1
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	31.67	30.16
Bra013210.1-P	Field mustard	peroxisome	31.21	28.57
Bra001919.1-P	Field mustard	plastid	25.0	22.98
Bra032757.1-P	Field mustard	plastid	23.48	21.56

Protein Annotations

EnsemblPlants:Bra021392.1	EnsemblPlants:Bra021392.1-P	EnsemblPlantsGene:Bra021392	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ncoils:Coil	PANTHER:PTHR43272
PANTHER:PTHR43272:SF6	PFAM:PF00501	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801	UniParc:UPI0002544CC4
UniProt:M4DXZ6	MapMan:50.6.2	:	:	:	:

Description

AT2G47240 (E=0.0) CER8, LACS1 | long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein

Coordinates

chrA01:-:25404989..25408802

Molecular Weight (calculated)

74726.2 Da

IEP (calculated)

6.316

GRAVY (calculated)

-0.228

Length

660 amino acids

Sequence
(BLAST)

001: MKSFAAKVED GVRGENGKPS VGPVYRNLLS EKGFPPIDSD ITTAWDIFSK SVKKFPDNKM LGWRRIVDEK VGPYMWKTYK EAYEEVLQIG SALRALGAEP
101: GCRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVDHAEID FVFVQETKIK GLLEPDCKCA RRLKAIVSFT NVSEEHNLKA SEVGVKTYSW
201: FDFLQMGCEK PEETTPPKPF NICTIMYTSG TSGDPKGVVL THEAVATYIV GMDLFMDQFE DKMTDEDVYL SFLPLAHILD RMNEEYFFRK GASIGYYHGD
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFRKIRDK LGGRIRLLVS GGAPLSTEIE
401: EFLRVTCCCF VVQGYGLTET LGGTAMGFPD EMCMLGTVGI PAVYNEIRLE EVAEMGYDPL GENPAGEICI RGKCLFSGYY KNPELTQEVM KDGWFHTGDI
501: GEIQSNGVLK IIDRKKNLIK LSQGEYVALE NLENIYGQNS LVQDIWVYGD SFKSMLVAVI VPNQETVKRW AKELGFTKPF EELCSLSEFQ EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVARDLVT ATLKNRRNNL LKYYQVQVDE MYRKLASKKI

Best Arabidopsis Sequence Match ( AT2G47240.3 )
(BLAST)

001: MKSFAAKVEE GVKGIDGKPS VGPVYRNLLS EKGFPPIDSE ITTAWDIFSK SVEKFPDNNM LGWRRIVDEK VGPYMWKTYK EVYEEVLQIG SALRAAGAEP
101: GSRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVEHAEID FVFVQDTKIK GLLEPDCKCA KRLKAIVSFT NVSDELSHKA SEIGVKTYSW
201: IDFLHMGREK PEDTNPPKAF NICTIMYTSG TSGDPKGVVL THQAVATFVV GMDLYMDQFE DKMTHDDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGN
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFRKIRDK LGGRIRLLVS GGAPLSPEIE
401: EFLRVTCCCF VVQGYGLTET LGGTALGFPD EMCMLGTVGI PAVYNEIRLE EVSEMGYDPL GENPAGEICI RGQCMFSGYY KNPELTEEVM KDGWFHTGDI
501: GEILPNGVLK IIDRKKNLIK LSQGEYVALE HLENIFGQNS VVQDIWVYGD SFKSMLVAVV VPNPETVNRW AKDLGFTKPF EELCSFPELK EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVERDLVT ATLKNRRNNL LKYYQVQIDE MYRKLASKKI

Arabidopsis Description

LACS1Long chain acyl-CoA synthetase 1 [Source:UniProtKB/Swiss-Prot;Acc:O22898]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.