Factsheet for Os05t0132100-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G093600.1	Wheat	peroxisome	85.35	85.22
TraesCS1D01G077600.1	Wheat	golgi	85.2	85.07
TraesCS1A01G075000.1	Wheat	golgi	84.9	84.78
Zm00001d024723_P001	Maize	peroxisome	82.96	82.84
KXG21217	Sorghum	peroxisome	82.66	82.54
HORVU1Hr1G016200.16	Barley	peroxisome	85.5	73.33
GSMUA_Achr8P10780_001	Banana	peroxisome	71.15	71.69
VIT_07s0005g01790.t01	Wine grape	peroxisome	64.87	65.56
KRG96554	Soybean	peroxisome	64.87	65.56
KRH68292	Soybean	endoplasmic reticulum	64.72	65.41
Zm00001d010943_P001	Maize	peroxisome	13.75	65.25
KRH69184	Soybean	peroxisome	63.68	64.55
KRH31765	Soybean	peroxisome	63.38	64.24
PGSC0003DMT400023374	Potato	peroxisome	63.38	64.15
CDY69216	Canola	peroxisome	38.86	63.11
AT2G47240.2	Thale cress	peroxisome	60.84	61.67
Bra021392.1-P	Field mustard	peroxisome	60.39	61.21
CDY51419	Canola	peroxisome	60.39	61.21
CDY37793	Canola	peroxisome	39.01	60.56
CDX80093	Canola	peroxisome	39.01	60.56
CDY27501	Canola	peroxisome	59.49	60.3
CDY68722	Canola	peroxisome	25.56	60.21
CDX80092	Canola	mitochondrion, peroxisome	26.31	60.07
Bra004467.1-P	Field mustard	peroxisome	60.69	58.25
CDY71490	Canola	extracellular, peroxisome	13.0	56.49
CDY72011	Canola	peroxisome	17.79	56.4
KRH66241	Soybean	peroxisome	29.3	55.68
CDX95713	Canola	peroxisome	54.86	53.58
Os01t0681200-01	Rice	plasma membrane	48.13	48.42
Os06t0158000-01	Rice	plasma membrane	44.25	48.13
Os11t0558300-01	Rice	peroxisome	47.38	47.96
Os01t0655800-01	Rice	plasma membrane	43.95	43.24
Os11t0147000-01	Rice	peroxisome	38.27	36.11
Os12t0143900-01	Rice	peroxisome	37.67	35.64
Os11t0169800-01	Rice	plastid	19.13	35.26
Os12t0168700-01	Rice	vacuole	31.99	30.66
Os05t0317200-01	Rice	plastid	30.94	28.51
Os03t0845500-01	Rice	plastid	24.36	21.73

Protein Annotations

Gene3D:3.40.50.12780	EntrezGene:4337714	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ProteinID:BAF16470.1
ProteinID:BAS92121.1	ncoils:Coil	ProteinID:EEE62222.1	GO:GO:0001676	GO:GO:0003674	GO:GO:0003824
GO:GO:0004467	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010025
GO:GO:0010143	GO:GO:0031957	EnsemblPlantsGene:Os05g0132100	EnsemblPlants:Os05t0132100-02	PFAM:PF00501	ScanProsite:PS00455
PANTHER:PTHR43272	PANTHER:PTHR43272:SF6	UniProt:Q0DL03	SUPFAM:SSF56801	UniParc:UPI0000E1232C	RefSeq:XP_015639871.1
RefSeq:XP_015639872.1	SEG:seg	:	:	:	:

Description

long-chain acyl-CoA synthetase 1AMP-dependent synthetase and ligase domain containing protein. (Os05t0132100-02);Similar to cDNA clone:001-200-C01, full insert sequence. (Os05t0132100-03);Similar to cDNA clone:001-200-C01, full insert sequence. (Os05t0132100-04)

Coordinates

chr5:-:1866886..1873316

Molecular Weight (calculated)

74919.7 Da

IEP (calculated)

7.640

GRAVY (calculated)

-0.239

Length

669 amino acids

Sequence
(BLAST)

001: MEGGTKKVFT VQVEDGKPRK DGRPAVGPVF RSALSKDGFP PLEPDMKTSW DVFRVAAGKY PDNRMLGWRP VKDGVIGPYI WKSYREVYEE VLQVGSALQQ
101: LGVKPGSRIG IYGSNCPQWI VAMQACNGYS LICVPLYDTL GAGAVDFIID HAEIDVIFVQ DKKIKEILSA NCKSAKRVKG LVAFTSGTSE EITSADQIGM
201: KLYSWKDFLK MGKENPAQPC APKPNDTCTI MYTSGTSGEP KGVMLSHESH AIYVKGVDLF MEQFDDKMTT DDVFLSFLPL AHILDRMIEE FFFHKGASVG
301: YYHGDLNALR DDLMELKPTL LVGVPRVYEK IYEGILKALS ELRPLRRLIF NALYNRKLAN MKAGCTHKTA SPFADMLAFR KVKARLGGRL RLLISGGAPL
401: SNEIEEFLRV TSCAYFIQGY GLTETLGPST VCYPDDMSLV GTVGVAATYT ELRLEEVPEM GYNPLGTPSR GEICVRGNFF TGYYKNPELT NEVMADGWFH
501: TGDIGEMNSD GILKVIDRKK NIFKLSQGEY VAVEYLEKVY VFPPTVEDVW VYGDSFRSML VAVVNPHEEN TMKWAESNGC KGSFAEICKS EGLKEHILKE
601: LQSVAAKNKL RGFEYVKGVI LDPIPFDLER DLVTATMKKK RNNMLKYYKP EIEKVYQKLE EQRVAAKSK

Best Arabidopsis Sequence Match ( AT2G47240.3 )
(BLAST)

001: MKSFAAKVEE GVKGIDGKPS VGPVYRNLLS EKGFPPIDSE ITTAWDIFSK SVEKFPDNNM LGWRRIVDEK VGPYMWKTYK EVYEEVLQIG SALRAAGAEP
101: GSRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVEHAEID FVFVQDTKIK GLLEPDCKCA KRLKAIVSFT NVSDELSHKA SEIGVKTYSW
201: IDFLHMGREK PEDTNPPKAF NICTIMYTSG TSGDPKGVVL THQAVATFVV GMDLYMDQFE DKMTHDDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGN
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFRKIRDK LGGRIRLLVS GGAPLSPEIE
401: EFLRVTCCCF VVQGYGLTET LGGTALGFPD EMCMLGTVGI PAVYNEIRLE EVSEMGYDPL GENPAGEICI RGQCMFSGYY KNPELTEEVM KDGWFHTGDI
501: GEILPNGVLK IIDRKKNLIK LSQGEYVALE HLENIFGQNS VVQDIWVYGD SFKSMLVAVV VPNPETVNRW AKDLGFTKPF EELCSFPELK EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVERDLVT ATLKNRRNNL LKYYQVQIDE MYRKLASKKI

Arabidopsis Description

LACS1Long chain acyl-CoA synthetase 1 [Source:UniProtKB/Swiss-Prot;Acc:O22898]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.