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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome

Predictor Summary:
  • plastid 1
  • peroxisome 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome
Any Predictor:peroxisome, plastid
BaCelLo:plastid
MultiLoc:peroxisome
PProwler:mitochondrion
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX80092 Canola mitochondrion, peroxisome 97.18 94.2
CDY69216 Canola peroxisome 83.45 57.52
CDY37793 Canola peroxisome 83.45 54.99
CDX80093 Canola peroxisome 83.45 54.99
Zm00001d010943_P001 Maize peroxisome 26.06 52.48
CDY27501 Canola peroxisome 90.49 38.94
CDY51419 Canola peroxisome 90.14 38.79
AT2G47240.2 Thale cress peroxisome 89.08 38.33
Bra004467.1-P Field mustard peroxisome 93.31 38.02
CDX95713 Canola peroxisome 86.27 35.77
KRH69184 Soybean peroxisome 67.25 28.94
KRH31765 Soybean peroxisome 66.55 28.64
KRH68292 Soybean endoplasmic reticulum 66.2 28.4
KRG96554 Soybean peroxisome 65.49 28.1
CDX92843 Canola peroxisome 21.13 28.04
KRH66241 Soybean peroxisome 33.1 26.7
PGSC0003DMT400023374 Potato peroxisome 61.62 26.48
VIT_07s0005g01790.t01 Wine grape peroxisome 61.27 26.28
Zm00001d024723_P001 Maize peroxisome 60.56 25.67
Os05t0132100-02 Rice plasma membrane 60.21 25.56
GSMUA_Achr8P10780_001 Banana peroxisome 59.15 25.3
KXG21217 Sorghum peroxisome 59.51 25.22
TraesCS1B01G093600.1 Wheat peroxisome 58.8 24.93
TraesCS1A01G075000.1 Wheat golgi 58.45 24.78
TraesCS1D01G077600.1 Wheat golgi 58.1 24.63
CDX86825 Canola peroxisome 55.63 23.72
CDY47618 Canola peroxisome 54.58 23.24
CDY03515 Canola peroxisome 54.23 23.09
CDX94232 Canola peroxisome 53.17 22.84
CDY25270 Canola peroxisome 52.46 22.61
CDY40856 Canola peroxisome 55.99 21.69
HORVU1Hr1G016200.16 Barley peroxisome 59.15 21.54
CDY59237 Canola peroxisome 50.35 21.47
CDY29350 Canola peroxisome 50.0 21.32
CDY46530 Canola peroxisome 55.28 19.97
CDY65251 Canola peroxisome 14.79 17.95
CDY27725 Canola plastid 42.96 17.76
CDY05217 Canola plastid 42.96 17.76
CDX74115 Canola plastid 42.25 17.24
CDY49993 Canola mitochondrion 42.25 17.24
CDX86151 Canola peroxisome 41.2 16.74
CDX80638 Canola peroxisome 40.85 16.6
CDY64879 Canola peroxisome 55.99 16.56
CDX68052 Canola endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole 38.38 15.73
CDX79212 Canola endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole 38.38 15.73
CDY15082 Canola peroxisome 38.03 15.08
CDY66248 Canola peroxisome 38.03 14.98
CDY67321 Canola plastid 28.52 11.28
CDY01190 Canola plastid 27.11 10.71
CDY53212 Canola plastid 28.17 10.7
CDY12731 Canola plastid 26.76 10.48
CDY71490 Canola extracellular, peroxisome 0.7 1.3
CDY72011 Canola peroxisome 0.7 0.95
Protein Annotations
EnsemblPlants:CDY68722EnsemblPlantsGene:GSBRNA2T00077110001Gene3D:3.40.50.12780GO:A0A078JTH3GO:GO:0003674GO:GO:0003824
GO:GO:0008150GO:GO:0008152InterPro:AMP-dep_Synth/LigPANTHER:PTHR43272PANTHER:PTHR43272:SF6PFAM:PF00501
ProteinID:CDY68722ProteinID:CDY68722.1SEG:segSUPFAM:SSF56801UniParc:UPI0004EEF734UniProt:A0A078JTH3
MapMan:35.1:::::
Description
BnaCnng60230DBnaCnng60230D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JTH3]
Coordinates
chrLK037848:-:3544..5115
Molecular Weight (calculated)
32092.2 Da
IEP (calculated)
5.553
GRAVY (calculated)
-0.178
Length
284 amino acids
Sequence
(BLAST)
001: IRDKLGGRIR LLISGGAPLS PEIEEFLRVT CCCFVLQGYG LTETLGGTAM CIPDEMCMLG TVGIPAVYNE IRLEEVAEMG YDPLGENPAG EICIRGKCLF
101: SGYYKNPKLT DEVLKDGWFH TGDIGEIQPN GVLKIIDRKK NLIKLSQGEY VALENLENIY GQNSVVQDIW VYGDSFKSML VAVIVPNPEV VNRWAKDLGL
201: NKPFEELCSL TELQEHIILE LKSTAEKNKL KRFEYIKAVK VEIKSFDLER DLVTATLKNK RNNLLKYYQA QVDEMYRKLA SKKI
Best Arabidopsis Sequence Match ( AT1G64400.1 )
(BLAST)
001: MATGRYIVEV EKGKQGVDGG SPSVGPVYRS IYAKDGFPEP PDDLVSAWDI FRLSVEKSPN NPMLGRREIV DGKAGKYVWQ TYKEVHNVVI KLGNSIRTIG
101: VGKGDKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA GAIEFIICHA EVSLAFAEEN KISELLKTAP KSTKYLKYIV SFGEVTNNQR VEAERHRLTI
201: YSWDQFLKLG EGKHYELPEK RRSDVCTIMY TSGTTGDPKG VLLTNESIIH LLEGVKKLLK TIDEELTSKD VYLSYLPLAH IFDRVIEELC IYEAASIGFW
301: RGDVKILIED IAALKPTVFC AVPRVLERIY TGLQQKLSDG GFVKKKLFNF AFKYKHKNME KGQPHEQASP IADKIVFKKV KEGLGGNVRL ILSGAAPLAA
401: HIESFLRVVA CAHVLQGYGL TESCGGTFVS IPNELSMLGT VGPPVPNVDI RLESVPEMGY DALASNPRGE ICIRGKTLFS GYYKREDLTQ EVFIDGWLHT
501: GDVGEWQPDG AMKIIDRKKN IFKLSQGEYV AVENLENIYS HVAAIESIWV YGNSYESYLV AVVCPSKIQI EHWAKEHKVS GDFESICRNQ KTKEFVLGEF
601: NRVAKDKKLK GFELIKGVHL DTVPFDMERD LITPSYKMKR PQLLKYYQKE IDEMYKKNRE VQLRV
Arabidopsis Description
LACS3Long chain acyl-CoA synthetase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7W4]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.