Factsheet for Bra004467.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72011	Canola	peroxisome	29.84	98.58
CDX80092	Canola	mitochondrion, peroxisome	39.89	94.88
CDY68722	Canola	peroxisome	38.02	93.31
CDY71490	Canola	extracellular, peroxisome	20.09	90.91
Bra021392.1-P	Field mustard	peroxisome	84.94	89.7
AT2G47240.2	Thale cress	peroxisome	84.36	89.09
KRH68292	Soybean	endoplasmic reticulum	65.57	69.03
KRG96554	Soybean	peroxisome	64.71	68.13
KRH69184	Soybean	peroxisome	63.41	66.97
KRH31765	Soybean	peroxisome	62.98	66.52
VIT_07s0005g01790.t01	Wine grape	peroxisome	62.41	65.71
PGSC0003DMT400023374	Potato	peroxisome	59.68	62.93
GSMUA_Achr8P10780_001	Banana	peroxisome	59.54	62.5
KXG21217	Sorghum	peroxisome	58.54	60.9
TraesCS1B01G093600.1	Wheat	peroxisome	58.54	60.9
Os05t0132100-02	Rice	plasma membrane	58.25	60.69
TraesCS1A01G075000.1	Wheat	golgi	58.25	60.6
TraesCS1D01G077600.1	Wheat	golgi	58.11	60.45
Zm00001d024723_P001	Maize	peroxisome	58.11	60.45
KRH66241	Soybean	peroxisome	27.98	55.4
HORVU1Hr1G016200.16	Barley	peroxisome	58.54	52.31
Zm00001d010943_P001	Maize	peroxisome	10.33	51.06
Bra013735.1-P	Field mustard	peroxisome	43.9	49.12
Bra035259.1-P	Field mustard	peroxisome	46.48	48.65
Bra033159.1-P	Field mustard	peroxisome	41.32	47.68
Bra032284.1-P	Field mustard	peroxisome	42.47	44.44
Bra027700.1-P	Field mustard	peroxisome	46.92	39.59
Bra020793.1-P	Field mustard	plastid	32.86	36.41
Bra001177.1-P	Field mustard	plastid	35.58	35.63
Bra009951.1-P	Field mustard	peroxisome	34.29	34.24
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	29.99	30.16
Bra013210.1-P	Field mustard	peroxisome	29.56	28.57
Bra001919.1-P	Field mustard	plastid	23.67	22.98
Bra032757.1-P	Field mustard	plastid	22.38	21.7

Protein Annotations

EnsemblPlants:Bra004467.1	EnsemblPlants:Bra004467.1-P	EnsemblPlantsGene:Bra004467	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF6
PFAM:PF00501	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801	UniParc:UPI00025480C1	UniProt:M4CJT3
MapMan:50.6.2	:	:	:	:	:

Description

AT2G47240 (E=0.0) CER8, LACS1 | long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein

Coordinates

chrA05:-:290873..294758

Molecular Weight (calculated)

78737.4 Da

IEP (calculated)

6.690

GRAVY (calculated)

-0.172

Length

697 amino acids

Sequence
(BLAST)

001: MKSFAAKVEE GVKGENGKPS VGPVYRNLLS EKGFPPIDSD ITTAWDIFCK SVEKFPGNKM LGWRPIVDKK VGPYVWKTYK EAYEEVLQIG SALRALGAEP
101: GCRVGIYGIN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVDHAEID FVFVQDTKIK GLLEPDSICS KRLKAIVSFT NVSKEDSIKA SEIGVKTYSW
201: LDFLHMGREK PEEISPPKPF NTCTIMYTSG TSGDPKGVVL THEAVATFVV GVDLFMDQFE DKMTHEDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGD
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLSWLNRGY SHSKASPMAD LIAFRKIRDK LGGRIRLLIS GGAPLSPEIE
401: EFLRVTCCCF VLQGYGLTET LGGTALCVPD EMCMLGTVGI PAVYNEIRLE EVAEMGYDPL GENPAGEICI KGKCLFSGYY KNPELTDEVL KDGWFHTGDI
501: GEIQPNGVLK IIDRKKNLIK LSQGEYVALE NLENIYGQNS LVQEIWVYGD SFKSMLVAVI VPNPEVVNRW AKDLGLNKPF EELCSLTELQ EHIILELKST
601: AEKNKLKRFE YIKAVTVEIK PFDLERDLVT ATLKNKRNNL LKYYQVSNYL CLTLIFVDKI HRLVQSTNVP LYRYKSTRCT ENWRPRKSES ITMMCAS

Best Arabidopsis Sequence Match ( AT2G47240.3 )
(BLAST)

001: MKSFAAKVEE GVKGIDGKPS VGPVYRNLLS EKGFPPIDSE ITTAWDIFSK SVEKFPDNNM LGWRRIVDEK VGPYMWKTYK EVYEEVLQIG SALRAAGAEP
101: GSRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVEHAEID FVFVQDTKIK GLLEPDCKCA KRLKAIVSFT NVSDELSHKA SEIGVKTYSW
201: IDFLHMGREK PEDTNPPKAF NICTIMYTSG TSGDPKGVVL THQAVATFVV GMDLYMDQFE DKMTHDDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGN
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFRKIRDK LGGRIRLLVS GGAPLSPEIE
401: EFLRVTCCCF VVQGYGLTET LGGTALGFPD EMCMLGTVGI PAVYNEIRLE EVSEMGYDPL GENPAGEICI RGQCMFSGYY KNPELTEEVM KDGWFHTGDI
501: GEILPNGVLK IIDRKKNLIK LSQGEYVALE HLENIFGQNS VVQDIWVYGD SFKSMLVAVV VPNPETVNRW AKDLGFTKPF EELCSFPELK EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVERDLVT ATLKNRRNNL LKYYQVQIDE MYRKLASKKI

Arabidopsis Description

LACS1Long chain acyl-CoA synthetase 1 [Source:UniProtKB/Swiss-Prot;Acc:O22898]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.