Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51419 | Canola | peroxisome | 91.97 | 91.97 |
| Bra021392.1-P | Field mustard | peroxisome | 91.97 | 91.97 |
| CDY27501 | Canola | peroxisome | 91.21 | 91.21 |
| CDY68722 | Canola | peroxisome | 38.33 | 89.08 |
| CDX80092 | Canola | mitochondrion, peroxisome | 39.55 | 89.08 |
| CDY72011 | Canola | peroxisome | 28.33 | 88.63 |
| Bra004467.1-P | Field mustard | peroxisome | 89.09 | 84.36 |
| CDY71490 | Canola | extracellular, peroxisome | 19.24 | 82.47 |
| CDX95713 | Canola | peroxisome | 81.82 | 78.83 |
| KRH68292 | Soybean | endoplasmic reticulum | 69.39 | 69.18 |
| KRG96554 | Soybean | peroxisome | 68.64 | 68.43 |
| KRH69184 | Soybean | peroxisome | 68.33 | 68.33 |
| KRH31765 | Soybean | peroxisome | 67.73 | 67.73 |
| VIT_07s0005g01790.t01 | Wine grape | peroxisome | 66.67 | 66.47 |
| PGSC0003DMT400023374 | Potato | peroxisome | 63.18 | 63.09 |
| GSMUA_Achr8P10780_001 | Banana | peroxisome | 63.03 | 62.65 |
| KXG21217 | Sorghum | peroxisome | 62.42 | 61.49 |
| TraesCS1B01G093600.1 | Wheat | peroxisome | 62.42 | 61.49 |
| TraesCS1A01G075000.1 | Wheat | golgi | 62.12 | 61.19 |
| TraesCS1D01G077600.1 | Wheat | golgi | 61.97 | 61.04 |
| Zm00001d024723_P001 | Maize | peroxisome | 61.82 | 60.9 |
| Os05t0132100-02 | Rice | plasma membrane | 61.67 | 60.84 |
| KRH66241 | Soybean | peroxisome | 30.3 | 56.82 |
| Zm00001d010943_P001 | Maize | peroxisome | 11.52 | 53.9 |
| AT2G47245.1 | Thale cress | endoplasmic reticulum | 10.45 | 53.08 |
| HORVU1Hr1G016200.16 | Barley | peroxisome | 62.27 | 52.69 |
| AT1G64400.1 | Thale cress | cytosol, peroxisome, plastid | 49.09 | 48.72 |
| AT4G23850.1 | Thale cress | peroxisome | 48.18 | 47.75 |
| AT4G11030.1 | Thale cress | peroxisome | 47.88 | 47.45 |
| AT1G49430.1 | Thale cress | peroxisome | 44.7 | 44.36 |
| AT3G05970.1 | Thale cress | plastid | 38.64 | 36.38 |
| AT5G27600.1 | Thale cress | peroxisome, plastid | 37.42 | 35.29 |
| AT1G77590.1 | Thale cress | peroxisome, plastid | 31.36 | 29.96 |
| AT2G04350.1 | Thale cress | peroxisome | 30.45 | 27.92 |
| AT3G23790.1 | Thale cress | plastid | 26.36 | 24.1 |
| AT4G14070.1 | Thale cress | plastid | 24.09 | 21.87 |
Protein Annotations
| Gene3D:3.40.50.12780 | MapMan:50.6.2 | EntrezGene:819337 | ProteinID:AAB63824.1 | ProteinID:AEC10818.1 | ProteinID:AEC10819.1 |
| EMBL:AF503751 | EMBL:AK220997 | EMBL:AK221992 | EMBL:AK317315 | InterPro:AMP-binding_CS | InterPro:AMP-dep_Synth/Lig |
| ProteinID:ANM63045.1 | ArrayExpress:AT2G47240 | EnsemblPlantsGene:AT2G47240 | RefSeq:AT2G47240 | TAIR:AT2G47240 | RefSeq:AT2G47240-TAIR-G |
| EnsemblPlants:AT2G47240.2 | TAIR:AT2G47240.2 | EMBL:AY056380 | EMBL:AY133648 | Symbol:CER8 | GO:GO:0000166 |
| GO:GO:0001676 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004467 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006629 |
| GO:GO:0006631 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010025 |
| GO:GO:0010143 | GO:GO:0016874 | GO:GO:0031957 | GO:GO:0102391 | Symbol:LACS1 | RefSeq:NP_001031554.1 |
| RefSeq:NP_001318440.1 | RefSeq:NP_182246.1 | UniProt:O22898 | PFAM:PF00501 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000112 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0006504 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0009067 | PO:PO:0009072 | PO:PO:0009073 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00455 | PANTHER:PTHR43272 |
| PANTHER:PTHR43272:SF6 | SUPFAM:SSF56801 | UniParc:UPI000004BF34 | SEG:seg | : | : |
Description
LACS1Long chain acyl-CoA synthetase 1 [Source:UniProtKB/Swiss-Prot;Acc:O22898]
Coordinates
chr2:+:19392744..19397831
Molecular Weight (calculated)
74602.1 Da
IEP (calculated)
6.297
GRAVY (calculated)
-0.214
Length
660 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSFAAKVEE GVKGIDGKPS VGPVYRNLLS EKGFPPIDSE ITTAWDIFSK SVEKFPDNNM LGWRRIVDEK VGPYMWKTYK EVYEEVLQIG SALRAAGAEP
101: GSRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVEHAEID FVFVQDTKIK GLLEPDCKCA KRLKAIVSFT NVSDELSHKA SEIGVKTYSW
201: IDFLHMGREK PEDTNPPKAF NICTIMYTSG TSGDPKGVVL THQAVATFVV GMDLYMDQFE DKMTHDDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGN
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFRKIRDK LGGRIRLLVS GGAPLSPEIE
401: EFLRVTCCCF VVQGYGLTET LGGTALGFPD EMCMLGTVGI PAVYNEIRLE EVSEMGYDPL GENPAGEICI RGQCMFSGYY KNPELTEEVM KDGWFHTGDI
501: GEILPNGVLK IIDRKKNLIK LSQGEYVALE HLENIFGQNS VVQDIWVYGD SFKSMLVAVV VPNPETVNRW AKDLGFTKPF EELCSFPELK EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVERDLVT ATLKNRRNNL LKYYQVQIDE MYRKLASKKI
101: GSRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVEHAEID FVFVQDTKIK GLLEPDCKCA KRLKAIVSFT NVSDELSHKA SEIGVKTYSW
201: IDFLHMGREK PEDTNPPKAF NICTIMYTSG TSGDPKGVVL THQAVATFVV GMDLYMDQFE DKMTHDDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGN
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFRKIRDK LGGRIRLLVS GGAPLSPEIE
401: EFLRVTCCCF VVQGYGLTET LGGTALGFPD EMCMLGTVGI PAVYNEIRLE EVSEMGYDPL GENPAGEICI RGQCMFSGYY KNPELTEEVM KDGWFHTGDI
501: GEILPNGVLK IIDRKKNLIK LSQGEYVALE HLENIFGQNS VVQDIWVYGD SFKSMLVAVV VPNPETVNRW AKDLGFTKPF EELCSFPELK EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVERDLVT ATLKNRRNNL LKYYQVQIDE MYRKLASKKI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.