Factsheet for GSMUA_Achr8P10780_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	peroxisome	10.24	95.77
Os05t0132100-02	Rice	plasma membrane	71.69	71.15
TraesCS1B01G093600.1	Wheat	peroxisome	71.54	70.9
TraesCS1A01G075000.1	Wheat	golgi	71.39	70.75
TraesCS1D01G077600.1	Wheat	golgi	70.93	70.3
KXG21217	Sorghum	peroxisome	70.78	70.15
Zm00001d024723_P001	Maize	peroxisome	70.63	70.0
VIT_07s0005g01790.t01	Wine grape	peroxisome	69.58	69.79
KRG96554	Soybean	peroxisome	66.42	66.62
KRH68292	Soybean	endoplasmic reticulum	66.42	66.62
PGSC0003DMT400023374	Potato	peroxisome	65.96	66.26
KRH31765	Soybean	peroxisome	64.76	65.15
KRH69184	Soybean	peroxisome	64.76	65.15
CDY69216	Canola	peroxisome	39.31	63.35
CDY51419	Canola	peroxisome	62.8	63.18
Bra021392.1-P	Field mustard	peroxisome	62.8	63.18
AT2G47240.2	Thale cress	peroxisome	62.65	63.03
CDY27501	Canola	peroxisome	62.05	62.42
CDY37793	Canola	peroxisome	39.91	61.48
CDX80093	Canola	peroxisome	39.91	61.48
CDY72011	Canola	peroxisome	19.28	60.66
HORVU1Hr1G016200.16	Barley	peroxisome	71.23	60.64
Bra004467.1-P	Field mustard	peroxisome	62.5	59.54
CDY68722	Canola	peroxisome	25.3	59.15
CDX80092	Canola	mitochondrion, peroxisome	26.05	59.04
Zm00001d010943_P001	Maize	peroxisome	12.2	57.45
CDY71490	Canola	extracellular, peroxisome	13.1	56.49
KRH66241	Soybean	peroxisome	29.52	55.68
CDX95713	Canola	peroxisome	56.63	54.89
GSMUA_Achr6P14370_001	Banana	peroxisome	51.51	52.21
GSMUA_Achr3P32060_001	Banana	peroxisome	50.45	51.15
GSMUA_Achr7P27390_001	Banana	peroxisome	47.59	48.17
GSMUA_Achr8P24080_001	Banana	mitochondrion	36.75	35.88
GSMUA_Achr11P...	Banana	endoplasmic reticulum	32.98	31.42
GSMUA_Achr2P08130_001	Banana	peroxisome, plastid	26.66	31.22
GSMUA_Achr1P13190_001	Banana	vacuole	29.67	30.69
GSMUA_Achr8P30270_001	Banana	peroxisome, plastid	31.63	30.13
GSMUA_AchrUn_...	Banana	peroxisome	4.82	25.4
GSMUA_Achr8P08820_001	Banana	peroxisome	13.86	24.47
GSMUA_Achr8P08810_001	Banana	mitochondrion	4.52	15.15

Protein Annotations

Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	GO:GO:0001676	GO:GO:0003674
GO:GO:0003824	GO:GO:0004467	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0010025	GO:GO:0010143	GO:GO:0031957	EnsemblPlantsGene:GSMUA_Achr8G10780_001	EnsemblPlants:GSMUA_Achr8P10780_001	EnsemblPlants:GSMUA_Achr8T10780_001
UniProt:M0TPD1	PFAM:PF00501	ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF6	SUPFAM:SSF56801
UniParc:UPI000296AF9B	:	:	:	:	:

Description

Putative Fatty acyl-CoA synthetase B [Source:GMGC_GENE;Acc:GSMUA_Achr8G10780_001]

Coordinates

chr8:-:7721312..7727256

Molecular Weight (calculated)

74874.3 Da

IEP (calculated)

6.909

GRAVY (calculated)

-0.235

Length

664 amino acids

Sequence
(BLAST)

001: MANHTVKVES GRAGEDGKPS VGPVYRNSLA KNGFPPLDPD MTTSWDVFRV AAEKYPNNRM LGWREIKNGK AGPYLWKTYK EVYEEVLQVG SALCHLGAKP
101: GSRIGIYGAN CPQWIVVMEA CNGYSLICVP LYDTLGSGAI DYILKHADID FVFVQDKKMK EILSSSCESA RLIKSIVSFS STTGEQNDAA ADIGIKLYSW
201: NETLRMGKEY PSEPLPPQPH NICTIMYTSG TSGNPKGVVL THESHATYVK GADLFLNEFE DKMTTDDVYL SFLPLAHILD RMIEEYFFHN GASVGYYQGD
301: IHALRDDLME LKPTLFAGVP RVFERLWLWV SGVLKALSEL RPLRRMIFNA LYKHKLRWMR LGYSHKTASP FADMLAFRKV KARLGGRVRL IISGGAPLNP
401: EIEEFLRVTS CAYLTQGYGL TETCGLSTVG FPDDMSLVGT VGVASTYSEV RLEEAPELGY DPLGTPSRGE ICVRGKTLFS EYYKNPELTK EVMVDGWFHT
501: GDIGEMRPDG VLKIIDRKKN IFKLSQGEYV AVEYLEKIYK ISPIVEDIWV YGDSFRSMLV AVVTPHEDSA KRWAEQNGHK ESFCDLCKLE VLNKFILQEL
601: KTVAENNKLR GFEYIKGILV DPLPFDIERD LVTPTMKKKR AQMLKFYQSE IDKLYHNILA EGRA

Best Arabidopsis Sequence Match ( AT2G47240.3 )
(BLAST)

001: MKSFAAKVEE GVKGIDGKPS VGPVYRNLLS EKGFPPIDSE ITTAWDIFSK SVEKFPDNNM LGWRRIVDEK VGPYMWKTYK EVYEEVLQIG SALRAAGAEP
101: GSRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVEHAEID FVFVQDTKIK GLLEPDCKCA KRLKAIVSFT NVSDELSHKA SEIGVKTYSW
201: IDFLHMGREK PEDTNPPKAF NICTIMYTSG TSGDPKGVVL THQAVATFVV GMDLYMDQFE DKMTHDDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGN
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFRKIRDK LGGRIRLLVS GGAPLSPEIE
401: EFLRVTCCCF VVQGYGLTET LGGTALGFPD EMCMLGTVGI PAVYNEIRLE EVSEMGYDPL GENPAGEICI RGQCMFSGYY KNPELTEEVM KDGWFHTGDI
501: GEILPNGVLK IIDRKKNLIK LSQGEYVALE HLENIFGQNS VVQDIWVYGD SFKSMLVAVV VPNPETVNRW AKDLGFTKPF EELCSFPELK EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVERDLVT ATLKNRRNNL LKYYQVQIDE MYRKLASKKI

Arabidopsis Description

LACS1Long chain acyl-CoA synthetase 1 [Source:UniProtKB/Swiss-Prot;Acc:O22898]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.