Factsheet for GSMUA_Achr8P24080_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15543	Sorghum	peroxisome	75.0	74.78
TraesCS4A01G184900.2	Wheat	peroxisome	75.29	73.56
Zm00001d023238_P002	Maize	plasma membrane	74.56	73.37
TraesCS4B01G133700.3	Wheat	peroxisome	75.0	73.28
TraesCS4D01G128700.3	Wheat	mitochondrion	74.71	72.99
Os12t0143900-01	Rice	peroxisome	75.74	72.84
TraesCS5B01G131800.3	Wheat	peroxisome	75.15	72.79
TraesCS5A01G133200.2	Wheat	peroxisome	74.41	72.08
TraesCS5D01G141300.1	Wheat	peroxisome	74.26	71.94
Os11t0147000-01	Rice	peroxisome	74.71	71.65
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	73.09	71.41
HORVU5Hr1G040740.17	Barley	peroxisome	74.85	71.19
KXG27718	Sorghum	peroxisome	72.79	71.02
HORVU4Hr1G025820.9	Barley	peroxisome, plastid	73.09	66.27
PGSC0003DMT400063438	Potato	peroxisome	7.94	58.7
GSMUA_AchrUn_...	Banana	peroxisome	4.85	46.48
GSMUA_Achr3P32060_001	Banana	peroxisome	36.32	37.71
GSMUA_Achr7P27390_001	Banana	peroxisome	36.32	37.65
GSMUA_Achr6P14370_001	Banana	peroxisome	35.88	37.25
GSMUA_Achr8P10780_001	Banana	peroxisome	35.88	36.75
GSMUA_Achr1P13190_001	Banana	vacuole	30.88	32.71
GSMUA_Achr2P08130_001	Banana	peroxisome, plastid	26.47	31.75
GSMUA_Achr11P...	Banana	endoplasmic reticulum	32.06	31.28
GSMUA_Achr8P30270_001	Banana	peroxisome, plastid	31.76	30.99
GSMUA_AchrUn_...	Banana	peroxisome	4.71	25.4
GSMUA_Achr8P08820_001	Banana	peroxisome	12.65	22.87
GSMUA_Achr8P08810_001	Banana	mitochondrion	4.26	14.65

Protein Annotations

Gene3D:3.40.50.12780	MapMan:5.7.3.1	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	GO:GO:0001676
GO:GO:0003674	GO:GO:0003824	GO:GO:0004467	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0006629	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010193	GO:GO:0016020	EnsemblPlantsGene:GSMUA_Achr8G24080_001	EnsemblPlants:GSMUA_Achr8P24080_001	EnsemblPlants:GSMUA_Achr8T24080_001
UniProt:M0TT61	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF17
SUPFAM:SSF56801	UniParc:UPI0002955135	:	:	:	:

Description

Putative Long-chain-fatty-acid--CoA ligase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G24080_001]

Coordinates

chr8:-:28370176..28384098

Molecular Weight (calculated)

75155.3 Da

IEP (calculated)

7.104

GRAVY (calculated)

-0.092

Length

680 amino acids

Sequence
(BLAST)

001: MDSAPQRRLR AIAGHLLASS DRDPNARLIA NPTAGEFALA QGYSVVLPEK LQTGKWNVYR SAQSPLKLVS RYPQHPDIGT LHDNFEHAVE TFRDYRYLGT
101: RIRVDGTVGE YKWMTYGEAG TSRSAIGSGL VYHGIRRAAC VGLYFINRPE WIIVDHACSA YSYISVPLYD TLGPDAVQYI VNHASIEVIF CVPQTLSILL
201: SFLSQIPSVR LIVVVGGIDE KMPSVASRTG VEIVTYSKLL SEGHSNLQPF CPPKPEDVAT ICYTSGTTGT PKGAVLTHKS LIANSVGTSI NIKFYPSDVY
301: ISYLPLAHIY ERVNQISLVY FGVAVGFYQG DNLKLMDDMA TLRPTLFSSV PRLYNRIYAG VMNAVKTTGG LRERLFNAAY NAKMQAIANG KNPSPMWDRL
401: VFNKIREKLG GRVRMMTSGA SPLSADVMDF LRICFGGQVF EGYGMTETAC VISCMDEGDN LTGHVGSPNP ACEIKLVDVP EMNYTSDDQP YPRGEICVRG
501: PIVFQGYYKD EVQTREVMDE DGWLHTGDIG LWFPGGRLKI IDRKKNIFKL AQGEYIAPEK IENVYAKCKF VSQCFVYGDS LNSCLVAIVS VDQDILKAWA
601: TSEGIKYEDL GHLCADRRAR AAVLEDMDAL GKQAQLRGFE FVKAVTLVLE PFSLENGLLT PTFKANQETS SQGIFCKGNS

Best Arabidopsis Sequence Match ( AT3G05970.1 )
(BLAST)

001: MDSSSSSSSA AARRRINAIH SHLVTSSRSS PLLRSNPTAG EFCLDNGYSV VLPEKLNTGS WNVYRSAKSP FKLVSRFPDH PDIATLHDNF EHAVHDFRDY
101: KYLGTRVRVD GTVGDYKWMT YGEAGTARTA LGSGLVHHGI PMGSSVGIYF INRPEWLIVD HACSSYSYVS VPLYDTLGPD AVKFIVNHAT VQAIFCVAET
201: LNSLLSCLSE MPSVRLVVVV GGLIESLPSL PSSSGVKVVS YSVLLNQGRS NPQRFFPPKP DDVATICYTS GTTGTPKGVV LTHANLIANV AGSSFSVKFF
301: SSDVYISYLP LAHIYERANQ ILTVYFGVAV GFYQGDNMKL LDDLAALRPT VFSSVPRLYN RIYAGIINAV KTSGGLKERL FNAAYNAKKQ ALLNGKSASP
401: IWDRLVFNKI KDRLGGRVRF MTSGASPLSP EVMEFLKVCF GGRVTEGYGM TETSCVISGM DEGDNLTGHV GSPNPACEVK LVDVPEMNYT SADQPHPRGE
501: ICVRGPIIFT GYYKDEIQTK EVIDEDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY AKCKFVGQCF IYGDSFNSSL VAVVSVDPDV
601: LKSWAASEGI KGGDLRELCN NPRVKAAVLS DMDTVGREAQ LRGFEFAKAV TLVLEPFTLE NGLLTPTFKI KRPQAKEYFA EAITNMYKEL GASDPSANRG
701: L

Arabidopsis Description

LACS6Long chain acyl-CoA synthetase 6, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.