Factsheet for GSMUA_AchrUn_randomP22060_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
peroxisome 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P10780_001	Banana	peroxisome	95.77	10.24
GSMUA_Achr6P14370_001	Banana	peroxisome	60.56	6.56
GSMUA_Achr3P32060_001	Banana	peroxisome	59.15	6.41
GSMUA_Achr7P27390_001	Banana	peroxisome	57.75	6.25
GSMUA_Achr8P08820_001	Banana	peroxisome	29.58	5.59
GSMUA_Achr2P08130_001	Banana	peroxisome, plastid	43.66	5.47
GSMUA_Achr8P24080_001	Banana	mitochondrion	46.48	4.85
GSMUA_Achr1P13190_001	Banana	vacuole	43.66	4.83
GSMUA_Achr11P...	Banana	endoplasmic reticulum	45.07	4.59
GSMUA_Achr8P30270_001	Banana	peroxisome, plastid	42.25	4.3
GSMUA_Achr8P08810_001	Banana	mitochondrion	0.0	0.0
GSMUA_AchrUn_...	Banana	peroxisome	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP22060_001	EnsemblPlants:GSMUA_AchrUn_randomT22060_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG22060_001	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF6	PFAM:PF00501
SUPFAM:SSF56801	UniParc:UPI00029513CA	UniProt:M0UBB4	MapMan:35.1	:	:

Description

Fatty acyl-CoA synthetase B [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG22060_001]

Coordinates

chrchrUn_random:+:107626478..107626814

Molecular Weight (calculated)

7839.4 Da

IEP (calculated)

4.683

GRAVY (calculated)

-0.214

Length

71 amino acids

Sequence
(BLAST)

1: MSLVGTVGVA STYSEVRLEE APELGYDPLG TPSRGEICVR GKTLFSEYYK NPELTKEVMV DGWFHTGILG R

Best Arabidopsis Sequence Match ( AT2G47240.4 )
(BLAST)

001: MLGWRRIVDE KVGPYMWKTY KEVYEEVLQI GSALRAAGAE PGSRVGIYGV NCPQWIIAME ACAAHTLICV PLYDTLGSGA VDYIVEHAEI DFVFVQDTKI
101: KGLLEPDCKC AKRLKAIVSF TNVSDELSHK ASEIGVKTYS WIDFLHMGRE KPEDTNPPKA FNICTIMYTS GTSGDPKGVV LTHQAVATFV VGMDLYMDQF
201: EDKMTHDDVY LSFLPLAHIL DRMNEEYFFR KGASVGYYHG NLNVLRDDIQ ELKPTYLAGV PRVFERIHEG IQKALQELNP RRRFIFNALY KHKLAWLNRG
301: YSHSKASPMA DFIAFRKIRD KLGGRIRLLV SGGAPLSPEI EEFLRVTCCC FVVQGYGLTE TLGGTALGFP DEMCMLGTVG IPAVYNEIRL EEVSEMGYDP
401: LGENPAGEIC IRGQCMFSGY YKNPELTEEV MKDGWFHTGD IGEILPNGVL KIIDRKKNLI KLSQGEYVAL EHLENIFGQN SVVQDIWVYG DSFKSMLVAV
501: VVPNPETVNR WAKDLGFTKP FEELCSFPEL KEHIISELKS TAEKNKLRKF EYIKAVTVET KPFDVERDLV TATLKNRRNN LLKYYQVQID EMYRKLASKK
601: I

Arabidopsis Description

LACS1Long chain acyl-CoA synthetase 1 [Source:UniProtKB/Swiss-Prot;Acc:O22898]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.