Factsheet for GSMUA_Achr8P30270_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

cytosol 2
plastid 3
peroxisome 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plastid
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	endoplasmic reticulum	87.66	87.66
GSMUA_Achr1P13190_001	Banana	vacuole	78.48	85.2
Os11t0169800-01	Rice	plastid	43.33	83.2
GSMUA_Achr2P08130_001	Banana	peroxisome, plastid	66.71	82.01
KXG23059	Sorghum	endoplasmic reticulum	79.05	78.94
Os12t0168700-01	Rice	vacuole	78.62	78.51
TraesCS5B01G118000.1	Wheat	endoplasmic reticulum	78.48	78.37
TraesCS5D01G129800.1	Wheat	golgi	78.48	78.37
TraesCS5A01G117700.1	Wheat	endoplasmic reticulum, vacuole	78.34	78.22
HORVU5Hr1G036460.1	Barley	endoplasmic reticulum	78.19	78.08
TraesCS4A01G207000.1	Wheat	golgi	78.19	77.86
Zm00001d023538_P002	Maize	plastid	77.91	77.79
VIT_18s0001g02810.t01	Wine grape	vacuole	77.76	77.76
TraesCS4D01G108300.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	77.76	77.76
TraesCS4B01G110600.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	77.76	77.76
Solyc11g018580.1.1	Tomato	plastid	67.86	77.54
HORVU4Hr1G019780.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	77.33	77.33
OQU82968	Sorghum	endoplasmic reticulum, plasma membrane	77.19	77.19
Zm00001d053009_P009	Maize	plastid	76.47	76.36
PGSC0003DMT400002337	Potato	mitochondrion	75.32	75.43
AT1G77590.1	Thale cress	peroxisome, plastid	74.75	75.4
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	74.32	74.75
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	74.32	74.75
KRH18736	Soybean	peroxisome, plastid	74.61	74.71
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	74.17	74.6
KRH53234	Soybean	mitochondrion	72.31	72.62
KRH16338	Soybean	plastid, vacuole	64.28	69.24
GSMUA_AchrUn_...	Banana	peroxisome	4.3	42.25
GSMUA_Achr6P14370_001	Banana	peroxisome	30.99	32.98
GSMUA_Achr3P32060_001	Banana	peroxisome	30.56	32.52
GSMUA_Achr8P24080_001	Banana	mitochondrion	30.99	31.76
GSMUA_Achr8P10780_001	Banana	peroxisome	30.13	31.63
GSMUA_Achr7P27390_001	Banana	peroxisome	28.98	30.79
GSMUA_AchrUn_...	Banana	peroxisome	4.88	26.98
GSMUA_Achr8P08820_001	Banana	peroxisome	12.91	23.94
GSMUA_Achr8P08810_001	Banana	mitochondrion	4.45	15.66

Protein Annotations

EnsemblPlants:GSMUA_Achr8P30270_001	EnsemblPlants:GSMUA_Achr8T30270_001	EnsemblPlantsGene:GSMUA_Achr8G30270_001	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF29
PFAM:PF00501	ScanProsite:PS00455	SUPFAM:SSF56801	UniParc:UPI000295BE6F	UniProt:M0TUX9	MapMan:50.6.2

Description

Putative Long-chain-fatty-acid--CoA ligase 4 [Source:GMGC_GENE;Acc:GSMUA_Achr8G30270_001]

Coordinates

chr8:-:32402794..32414484

Molecular Weight (calculated)

76346.6 Da

IEP (calculated)

8.002

GRAVY (calculated)

0.026

Length

697 amino acids

Sequence
(BLAST)

001: MNPYIVGIFV PLIASLMFRK SNNGKKRGLP VDVGGEPGYA VRNYRFTSPV ESLWEGVTTL AELFEQSCKC FAYRPLLGSR KLITKAIEVS QDGRSFEKLH
101: LGSYEWVSYG EAFRAVCSFA SGLVQLGHKK DERIAIFADT RAEWFIALQG CFRQNITVVT IYASLGEDAL CHSLNETEAS TVICGHKELK KLIDISQQLD
201: TVKRVIYIDE DGVSSEVSLA KKSTSWMIAS FGEVETMGRE KPVDAVLPLA ADIAVIMYTS GSTGLPKGVM MTHRNVLATV SAVMTIVPSI GTKDIYMAYL
301: PLAHILELAA ENVMVAAGIA IGYGSPLTLT DTSNKIKKGT KGDASVLRPT LMTAVPAILD RVRDGVRKKV GATGGLSKKL FDVAYGRRLA AINGSWFGAW
401: GLEKVLWDLL VFRKVRAVLG GHVRFLLSGG APLSGDTQRF INICLGAPIG QGYGLTETCA GGTFSEYDDT SVGRVGAPLP CSYIKLIDWA EGGYLVTDSP
501: MPRGEIVIGG PNVTLGYFKN EEKTKEVYKV DERGMRWFYT GDIGRFYPDG CLEIIDRKKD IVKLQHGEYV SLGKVESALI VSPYVDNIML HADPFHNFCV
601: ALVVAAPHAL EEWALKREIS YSDFSDLCQK EETVKEVHGS LIKAAKQAKL DKFETPAKIK LLPEPWTPES GLVTAALKLK REVIRKAFAD DLANLYA

Best Arabidopsis Sequence Match ( AT1G77590.1 )
(BLAST)

001: MIPYAAGVIV PLALTFLVQK SKKEKKRGVV VDVGGEPGYA IRNHRFTEPV SSHWEHISTL PELFEISCNA HSDRVFLGTR KLISREIETS EDGKTFEKLH
101: LGDYEWLTFG KTLEAVCDFA SGLVQIGHKT EERVAIFADT REEWFISLQG CFRRNVTVVT IYSSLGEEAL CHSLNETEVT TVICGSKELK KLMDISQQLE
201: TVKRVICMDD EFPSDVNSNW MATSFTDVQK LGRENPVDPN FPLSADVAVI MYTSGSTGLP KGVMMTHGNV LATVSAVMTI VPDLGKRDIY MAYLPLAHIL
301: ELAAESVMAT IGSAIGYGSP LTLTDTSNKI KKGTKGDVTA LKPTIMTAVP AILDRVRDGV RKKVDAKGGL SKKLFDFAYA RRLSAINGSW FGAWGLEKLL
401: WDVLVFRKIR AVLGGQIRYL LSGGAPLSGD TQRFINICVG APIGQGYGLT ETCAGGTFSE FEDTSVGRVG APLPCSFVKL VDWAEGGYLT SDKPMPRGEI
501: VIGGSNITLG YFKNEEKTKE VYKVDEKGMR WFYTGDIGRF HPDGCLEIID RKKDIVKLQH GEYVSLGKVE AALSISPYVE NIMVHADSFY SYCVALVVAS
601: QHTVEGWASK QGIDFANFEE LCTKEQAVKE VYASLVKAAK QSRLEKFEIP AKIKLLASPW TPESGLVTAA LKLKRDVIRR EFSEDLTKLY A

Arabidopsis Description

LACS9Long chain acyl-CoA synthetase 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAP8]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.