Factsheet for GSMUA_Achr2P08130_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

cytosol 2
peroxisome 3
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0169800-01	Rice	plastid	51.15	79.89
GSMUA_Achr8P30270_001	Banana	peroxisome, plastid	82.01	66.71
GSMUA_Achr11P...	Banana	endoplasmic reticulum	81.66	66.43
GSMUA_Achr1P13190_001	Banana	vacuole	72.13	63.71
Solyc11g018580.1.1	Tomato	plastid	68.08	63.28
KXG23059	Sorghum	endoplasmic reticulum	75.13	61.03
Os12t0168700-01	Rice	vacuole	74.07	60.17
TraesCS5A01G117700.1	Wheat	endoplasmic reticulum, vacuole	74.07	60.17
Zm00001d023538_P002	Maize	plastid	74.07	60.17
TraesCS5D01G129800.1	Wheat	golgi	73.9	60.03
TraesCS5B01G118000.1	Wheat	endoplasmic reticulum	73.72	59.89
HORVU5Hr1G036460.1	Barley	endoplasmic reticulum	73.37	59.6
TraesCS4D01G108300.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	72.84	59.25
OQU82968	Sorghum	endoplasmic reticulum, plasma membrane	72.49	58.97
Zm00001d053009_P009	Maize	plastid	72.49	58.88
TraesCS4A01G207000.1	Wheat	golgi	72.66	58.86
HORVU4Hr1G019780.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	72.13	58.68
KRH18736	Soybean	peroxisome, plastid	71.96	58.62
TraesCS4B01G110600.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	71.78	58.39
VIT_18s0001g02810.t01	Wine grape	vacuole	71.6	58.25
AT1G77590.1	Thale cress	peroxisome, plastid	70.72	58.03
KRH53234	Soybean	mitochondrion	70.37	57.49
PGSC0003DMT400002337	Potato	mitochondrion	70.37	57.33
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	70.02	57.29
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	70.02	57.29
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	69.84	57.14
KRH16338	Soybean	plastid, vacuole	60.49	53.01
GSMUA_AchrUn_...	Banana	peroxisome	5.47	43.66
GSMUA_Achr6P14370_001	Banana	peroxisome	32.98	28.55
GSMUA_Achr3P32060_001	Banana	peroxisome	32.63	28.24
GSMUA_Achr8P10780_001	Banana	peroxisome	31.22	26.66
GSMUA_Achr8P24080_001	Banana	mitochondrion	31.75	26.47
GSMUA_AchrUn_...	Banana	peroxisome	5.82	26.19
GSMUA_Achr7P27390_001	Banana	peroxisome	29.28	25.3
GSMUA_Achr8P08820_001	Banana	peroxisome	15.7	23.67
GSMUA_Achr8P08810_001	Banana	mitochondrion	0.53	1.52

Protein Annotations

EnsemblPlants:GSMUA_Achr2P08130_001	EnsemblPlants:GSMUA_Achr2T08130_001	EnsemblPlantsGene:GSMUA_Achr2G08130_001	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF29
PFAM:PF00501	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801	UniParc:UPI000296607E	UniProt:M0S654
MapMan:50.6.2	:	:	:	:	:

Description

Long-chain-fatty-acid--CoA ligase 4 [Source:GMGC_GENE;Acc:GSMUA_Achr2G08130_001]

Coordinates

chr2:-:12258798..12266577

Molecular Weight (calculated)

61321.9 Da

IEP (calculated)

6.576

GRAVY (calculated)

-0.020

Length

567 amino acids

Sequence
(BLAST)

001: MQEVFTPTWS NSLIDEVASG IVPSSPSTLP PTPLSSKGTA PRTACFTEVS TVICGHKELR KLIGISGQLD TVKHVIYIGE DSISTEVSLA KENTSWMITS
101: FTEVERMGTE KPVDADLPLS SDLAVIMYTS GSTGLPKGVM MTHGNVLATV SAVMTINPSI GTKDIYMAYL PLAHIFELAA EIGMVAAGIS VGYGSILTLT
201: DTSNKIKKGT KGDASVLRPT LMAAVPAILD RVRDAVRKKV DAKGGLSKKL FDVAYGRRMA AINGSWFGAW GLEKVLWDYI VFRKVRAVLG GHVRHLLSGA
301: APLSGDTQRF INICLGALIG QGYGLTETCG GGTFSDHDDT SVGRAGAPLP CSYVKLIDWP EGGYLVTDSP MPRGEIVIGG PNVTSGYFKN EEKTKEAYKV
401: DERGMRWFYT GDIGRFHPDG CLEIIDRKKD IVKLQHGEYV SLGKVEAALI VSPYVDNIML HADPFHSFCV ALIVAAQHAL EGWASNQGIS YSDFSDLCQR
501: EETVEEVQGS LLKAAKQAGL DKFEIPAKIK LIPDPWTPES GHVTAALKLK REIIRKAYAD DLEKLYA

Best Arabidopsis Sequence Match ( AT1G77590.2 )
(BLAST)

001: MFQGCFRRNV TVVTIYSSLG EEALCHSLNE TEVTTVICGS KELKKLMDIS QQLETVKRVI CMDDEFPSDV NSNWMATSFT DVQKLGRENP VDPNFPLSAD
101: VAVIMYTSGS TGLPKGVMMT HGNVLATVSA VMTIVPDLGK RDIYMAYLPL AHILELAAES VMATIGSAIG YGSPLTLTDT SNKIKKGTKG DVTALKPTIM
201: TAVPAILDRV RDGVRKKVDA KGGLSKKLFD FAYARRLSAI NGSWFGAWGL EKLLWDVLVF RKIRAVLGGQ IRYLLSGGAP LSGDTQRFIN ICVGAPIGQG
301: YGLTETCAGG TFSEFEDTSV GRVGAPLPCS FVKLVDWAEG GYLTSDKPMP RGEIVIGGSN ITLGYFKNEE KTKEVYKVDE KGMRWFYTGD IGRFHPDGCL
401: EIIDRKKDIV KLQHGEYVSL GKVEAALSIS PYVENIMVHA DSFYSYCVAL VVASQHTVEG WASKQGIDFA NFEELCTKEQ AVKEVYASLV KAAKQSRLEK
501: FEIPAKIKLL ASPWTPESGL VTAALKLKRD VIRREFSEDL TKLYA

Arabidopsis Description

LACS9Long chain acyl-CoA synthetase 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAP8]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.