Factsheet for TraesCS4D01G108300.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi

Predictor Summary:

plastid 2
peroxisome 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, secretory
Any Predictor:	peroxisome, plastid, secretory
iPSORT:	plastid
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G207000.1	Wheat	golgi	98.85	98.43
TraesCS4B01G110600.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	97.7	97.7
HORVU4Hr1G019780.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	97.42	97.42
Os11t0169800-01	Rice	plastid	46.48	89.26
OQU82968	Sorghum	endoplasmic reticulum, plasma membrane	85.22	85.22
Zm00001d053009_P009	Maize	plastid	85.22	85.1
TraesCS5D01G129800.1	Wheat	golgi	81.49	81.38
GSMUA_Achr8P30270_001	Banana	peroxisome, plastid	77.76	77.76
GSMUA_Achr11P...	Banana	endoplasmic reticulum	76.61	76.61
GSMUA_Achr1P13190_001	Banana	vacuole	70.16	76.17
Solyc11g018580.1.1	Tomato	plastid	66.0	75.41
VIT_18s0001g02810.t01	Wine grape	vacuole	74.89	74.89
PGSC0003DMT400002337	Potato	mitochondrion	74.03	74.14
GSMUA_Achr2P08130_001	Banana	peroxisome, plastid	59.25	72.84
AT1G77590.1	Thale cress	peroxisome, plastid	71.16	71.78
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	70.88	71.28
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	70.88	71.28
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	70.73	71.14
KRH18736	Soybean	peroxisome, plastid	70.3	70.4
KRH53234	Soybean	mitochondrion	69.3	69.6
KRH16338	Soybean	plastid, vacuole	61.55	66.31
TraesCS5D01G174000.1	Wheat	peroxisome	63.99	61.26
TraesCS7D01G110700.1	Wheat	peroxisome	31.56	33.85
TraesCS5D01G144200.2	Wheat	peroxisome	32.14	33.58
TraesCS1D01G077600.1	Wheat	golgi	32.28	33.58
TraesCS3D01G237900.1	Wheat	peroxisome	31.42	33.28
TraesCS5D01G420300.1	Wheat	golgi	29.27	30.82
TraesCS4D01G128700.3	Wheat	mitochondrion	30.42	30.46
TraesCS5D01G141300.1	Wheat	peroxisome	30.27	30.06
TraesCS5D01G533700.1	Wheat	plastid	22.81	21.69
TraesCS5D01G533800.3	Wheat	mitochondrion, plastid	22.67	21.38

Protein Annotations

EnsemblPlants:TraesCS4D01G108300.1	EnsemblPlantsGene:TraesCS4D01G108300	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF15	PFAM:PF00501
ScanProsite:PS00455	SUPFAM:SSF56801	TIGR:cd05927	MapMan:50.6.2	:	:

Description

No Description!

Coordinates

chr4D:-:87717019..87721592

Molecular Weight (calculated)

76900.7 Da

IEP (calculated)

7.669

GRAVY (calculated)

-0.135

Length

697 amino acids

Sequence
(BLAST)

001: MNPYFIGFVI PFVASLMLTK RKAEKKRGLP VDVGGEPGYA IRNYRSEQPV ETHWEGIFTL AELFEQSCKQ YAYMPLHGTR KLISRETEVA ADGRSFEKLH
101: MGEYEWKTYI EAFKAVCNFS SGLIQIGHQK DERVAIFADT RAEWQIALQA CFRQNITVVT IYASLGEGAL CHSLNETEVT TVICGRKELK KLIDINGQLD
201: TLKHVVYISE DDVSSEVSLA KQCTNWRVES FEEVERLGLE TPIEANLPLP SDTAVIMYTS GSTGMPKGVM MSHRNVLATA SAVMTIVPAL GKKDVYLAYL
301: PLAHILELAA ETIISAVGAS IGYGSPLTLT DTSNKIKRGT KGDASALRPT LMTAVPAILD RVRDGVRKNV DAKGGVAKKL FDIAYSRRLA AVNGSWFGAW
401: GLEKLVWDML VFQKVRAILG GRIRFILSGG APLSGETQRF INICLGAPIG QGYGLTETCA GGTFSEYNDT SVGRVGAPLS CSFIKLIDWV EGGYLTSDSP
501: MPRGEIVIGG PNVTKGYFKN EAKTNEVYKD DERGMRWFYS GDIGRLHPDG CLEIIDRKKD IVKLQHGEYV SLGKVEATLS VSPYVDNIMV HADPSQNYCV
601: ALVVTAHGEL ENWASKQGIA YSDFADLCQK QETVKEVLQS LAKAGKQSRL EKFEIPARIK LIPEPWTPES GLVTAALKLK REVIKKGYQD DLAKLYR

Best Arabidopsis Sequence Match ( AT1G77590.1 )
(BLAST)

001: MIPYAAGVIV PLALTFLVQK SKKEKKRGVV VDVGGEPGYA IRNHRFTEPV SSHWEHISTL PELFEISCNA HSDRVFLGTR KLISREIETS EDGKTFEKLH
101: LGDYEWLTFG KTLEAVCDFA SGLVQIGHKT EERVAIFADT REEWFISLQG CFRRNVTVVT IYSSLGEEAL CHSLNETEVT TVICGSKELK KLMDISQQLE
201: TVKRVICMDD EFPSDVNSNW MATSFTDVQK LGRENPVDPN FPLSADVAVI MYTSGSTGLP KGVMMTHGNV LATVSAVMTI VPDLGKRDIY MAYLPLAHIL
301: ELAAESVMAT IGSAIGYGSP LTLTDTSNKI KKGTKGDVTA LKPTIMTAVP AILDRVRDGV RKKVDAKGGL SKKLFDFAYA RRLSAINGSW FGAWGLEKLL
401: WDVLVFRKIR AVLGGQIRYL LSGGAPLSGD TQRFINICVG APIGQGYGLT ETCAGGTFSE FEDTSVGRVG APLPCSFVKL VDWAEGGYLT SDKPMPRGEI
501: VIGGSNITLG YFKNEEKTKE VYKVDEKGMR WFYTGDIGRF HPDGCLEIID RKKDIVKLQH GEYVSLGKVE AALSISPYVE NIMVHADSFY SYCVALVVAS
601: QHTVEGWASK QGIDFANFEE LCTKEQAVKE VYASLVKAAK QSRLEKFEIP AKIKLLASPW TPESGLVTAA LKLKRDVIRR EFSEDLTKLY A

Arabidopsis Description

LACS9Long chain acyl-CoA synthetase 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAP8]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.