Factsheet for TraesCS5D01G129800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
endoplasmic reticulum 3
extracellular 2
vacuole 3
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G118000.1	Wheat	endoplasmic reticulum	99.57	99.57
TraesCS5A01G117700.1	Wheat	endoplasmic reticulum, vacuole	99.43	99.43
HORVU5Hr1G036460.1	Barley	endoplasmic reticulum	97.28	97.28
KXG23059	Sorghum	endoplasmic reticulum	87.82	87.82
Zm00001d023538_P002	Maize	plastid	87.25	87.25
Os12t0168700-01	Rice	vacuole	87.25	87.25
TraesCS4D01G108300.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	81.38	81.49
GSMUA_Achr8P30270_001	Banana	peroxisome, plastid	78.37	78.48
GSMUA_Achr11P...	Banana	endoplasmic reticulum	76.5	76.61
GSMUA_Achr1P13190_001	Banana	vacuole	69.34	75.39
Solyc11g018580.1.1	Tomato	plastid	65.62	75.08
PGSC0003DMT400002337	Potato	mitochondrion	74.36	74.57
VIT_18s0001g02810.t01	Wine grape	vacuole	74.21	74.32
AT1G77590.1	Thale cress	peroxisome, plastid	73.5	74.24
GSMUA_Achr2P08130_001	Banana	peroxisome, plastid	60.03	73.9
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	73.07	73.59
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	73.07	73.59
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	72.92	73.45
KRH53234	Soybean	mitochondrion	70.77	71.18
KRH18736	Soybean	peroxisome, plastid	70.92	71.12
KRH16338	Soybean	plastid, vacuole	61.75	66.62
TraesCS5D01G174000.1	Wheat	peroxisome	62.75	60.16
TraesCS7D01G110700.1	Wheat	peroxisome	30.52	32.77
TraesCS5D01G144200.2	Wheat	peroxisome	30.8	32.23
TraesCS3D01G237900.1	Wheat	peroxisome	30.09	31.91
TraesCS1D01G077600.1	Wheat	golgi	30.52	31.79
TraesCS5D01G420300.1	Wheat	golgi	29.66	31.27
TraesCS4D01G128700.3	Wheat	mitochondrion	29.94	30.03
TraesCS5D01G141300.1	Wheat	peroxisome	30.09	29.91
TraesCS5D01G533700.1	Wheat	plastid	21.2	20.19
TraesCS5D01G533800.3	Wheat	mitochondrion, plastid	21.06	19.89

Protein Annotations

EnsemblPlants:TraesCS5D01G129800.1	EnsemblPlantsGene:TraesCS5D01G129800	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF15	PFAM:PF00501
ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801	TIGR:cd05927	MapMan:50.6.2	:

Description

No Description!

Coordinates

chr5D:+:204320177..204326583

Molecular Weight (calculated)

76741.6 Da

IEP (calculated)

6.590

GRAVY (calculated)

-0.070

Length

698 amino acids

Sequence
(BLAST)

001: MNPYFVGLLV PIAVSLLLQK RRKVEKKRGV PVDVGGEPGY AIRNHRFERP VETHWEGVNT LAELFEHACK EYLYMPLLGT RKLISREIES SPDGRSFEKL
101: HLGEYEWKCY AEAFKSVCNF SSGLVNLGRQ DNESVAIFAE TQAEWQIALQ ACFRQNITVV TIYSSLGEEA LCHSLNETEV TTVICGRKEL KKLIDIGWQL
201: DTVKRVIYIN EEGISAEVSI AQNSTSWSVK SFEEVGKLGA EAPVDANMPL PSDVAVIMYT SGSTGLPKGV MMTHRNVLAT LSAVMTIVPE LGKKDIYMAY
301: LPLAHILELA AETLMAAVGA SIGYGSALTL TDTSSKIKKG TLGDASALRP TLMTAVPAIL DRVRDGVRKK VDAKGGVAKK LFDIGYSRRL AAINGSWLGA
401: WGVEKLLWDR LVFTKVRAIL GGNIRFVLSG GAPLSGDTQR FINICLGAPI GQGYGLTETC AGGTFSEYDD TSVGRVGAPL PCSYIKLIDW AEGGYLTTDS
501: PMPRGEIVIG GPNVTKGYFK NEAKTSEVYK DDERGLRWFY SGDIGRFHPD GCLEIIDRKK DIVKLQHGEY VSLGKVEAAL AMSPYVENIM IHADPFHSYC
601: VALVVAAQNE LERWALQQGL AYTDFADLCQ KQEAVVEVLE SLTKAAKQAR LEKFETPAKV KLIPDPWTPE SGLVTAALKL KREVIRKTFE DDLAQLYA

Best Arabidopsis Sequence Match ( AT1G77590.1 )
(BLAST)

001: MIPYAAGVIV PLALTFLVQK SKKEKKRGVV VDVGGEPGYA IRNHRFTEPV SSHWEHISTL PELFEISCNA HSDRVFLGTR KLISREIETS EDGKTFEKLH
101: LGDYEWLTFG KTLEAVCDFA SGLVQIGHKT EERVAIFADT REEWFISLQG CFRRNVTVVT IYSSLGEEAL CHSLNETEVT TVICGSKELK KLMDISQQLE
201: TVKRVICMDD EFPSDVNSNW MATSFTDVQK LGRENPVDPN FPLSADVAVI MYTSGSTGLP KGVMMTHGNV LATVSAVMTI VPDLGKRDIY MAYLPLAHIL
301: ELAAESVMAT IGSAIGYGSP LTLTDTSNKI KKGTKGDVTA LKPTIMTAVP AILDRVRDGV RKKVDAKGGL SKKLFDFAYA RRLSAINGSW FGAWGLEKLL
401: WDVLVFRKIR AVLGGQIRYL LSGGAPLSGD TQRFINICVG APIGQGYGLT ETCAGGTFSE FEDTSVGRVG APLPCSFVKL VDWAEGGYLT SDKPMPRGEI
501: VIGGSNITLG YFKNEEKTKE VYKVDEKGMR WFYTGDIGRF HPDGCLEIID RKKDIVKLQH GEYVSLGKVE AALSISPYVE NIMVHADSFY SYCVALVVAS
601: QHTVEGWASK QGIDFANFEE LCTKEQAVKE VYASLVKAAK QSRLEKFEIP AKIKLLASPW TPESGLVTAA LKLKRDVIRR EFSEDLTKLY A

Arabidopsis Description

LACS9Long chain acyl-CoA synthetase 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAP8]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.