CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
cytosol 1
plastid 2
peroxisome 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023538_P002	Maize	plastid	96.7	96.7
Os12t0168700-01	Rice	vacuole	89.54	89.54
HORVU5Hr1G036460.1	Barley	endoplasmic reticulum	87.97	87.97
TraesCS5A01G117700.1	Wheat	endoplasmic reticulum, vacuole	87.97	87.97
TraesCS5D01G129800.1	Wheat	golgi	87.82	87.82
TraesCS5B01G118000.1	Wheat	endoplasmic reticulum	87.68	87.68
OQU82968	Sorghum	endoplasmic reticulum, plasma membrane	83.67	83.79
GSMUA_Achr8P30270_001	Banana	peroxisome, plastid	78.94	79.05
GSMUA_Achr11P...	Banana	endoplasmic reticulum	78.22	78.34
GSMUA_Achr1P13190_001	Banana	vacuole	71.49	77.73
VIT_18s0001g02810.t01	Wine grape	vacuole	75.21	75.32
GSMUA_Achr2P08130_001	Banana	peroxisome, plastid	61.03	75.13
Solyc11g018580.1.1	Tomato	plastid	65.47	74.92
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	73.78	74.31
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	73.78	74.31
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	73.64	74.17
PGSC0003DMT400002337	Potato	mitochondrion	73.93	74.14
AT1G77590.1	Thale cress	peroxisome, plastid	72.92	73.66
KRH18736	Soybean	peroxisome, plastid	72.06	72.27
KRH53234	Soybean	mitochondrion	71.49	71.9
KRH16338	Soybean	plastid, vacuole	62.32	67.23
KXG27640	Sorghum	peroxisome	63.32	60.88
EES01271	Sorghum	peroxisome	32.09	33.84
OQU75859	Sorghum	peroxisome	31.38	33.74
EES01192	Sorghum	peroxisome	31.38	33.44
KXG19348	Sorghum	peroxisome	30.52	32.82
KXG21217	Sorghum	peroxisome	31.09	32.39
KXG28707	Sorghum	peroxisome	30.23	31.73
EES15543	Sorghum	peroxisome	29.8	30.5
KXG27718	Sorghum	peroxisome	30.09	30.13
OQU82479	Sorghum	peroxisome	30.95	29.88
KXG27302	Sorghum	cytosol	2.15	27.78
KXG37146	Sorghum	plastid	22.49	21.27

Protein Annotations

EnsemblPlants:KXG23059	EnsemblPlantsGene:SORBI_3008G051300	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF15	PFAM:PF00501
ProteinID:KXG23058.1	ProteinID:KXG23059	ProteinID:KXG23059.1	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801
UniParc:UPI0001C808D6	UniProt:A0A1B6PBC1	MapMan:50.6.2	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:5084926..5091027

Molecular Weight (calculated)

76635.7 Da

IEP (calculated)

7.113

GRAVY (calculated)

-0.058

Length

698 amino acids

Sequence
(BLAST)

001: MNPYFVGILV PVAVSLLLRK RRKAERKRGV PVEVGGEPGY AVRNYRFEQP VETHWEGVST LAELFEQSCK EYVNMPLLGT RKLISRETEA APGGRSFEKL
101: HLGEYEWKCY AECFKSVCSF SSGLIRVGHE KNERVAIFAE TRAEWQIALQ ACFRQNITVV TIYASLGEEA LCHSLNETEV TTVVCGQKEL KKLIDISGQL
201: DTVKHVVYIN EEGISAEVSL AQNCTSWKVE SFEEVIRLGS ESPVEANMPL PSDVAVIMYT SGSTGLPKGV MMTHRNVLAT LSAVMTIVPA LGSKDIYLAY
301: LPLAHILELA AEALMAAVGA SIGYGSPLTL TDTSNKIKKG TLGDASALKP TLMTAVPAIL DRVRDGVRKK VDAKGGIAKQ LFDIAYNRRL AAINGSWLGA
401: WGLEKHLWDT LVFGKVRAIL GGKIRFVLSG GAPLSGDTQR FINICLGAPI GQGYGLTETC AGGTFSEYDD TSVGRVGAPL PCSFIKLIDW PEGGYLTTDL
501: PMPRGEIVIG GPNVTKGYFK NEAKTNEVYK DDEKGMRWFY SGDIGRFHPD GCLEIIDRKK DIVKLQHGEY VSLGKVEAAL IVSPYVENIM IHADPFHNYC
601: VALVVAAHIE LESWASQQGI KYSDFSDLCQ KQEAVKEVLG SLAKAAKQAR LEKFEIPAKI KLIPEPWTPE SGLVTAALKL KREVIRKTYE NDLAQLYA

Best Arabidopsis Sequence Match ( AT1G77590.1 )
(BLAST)

001: MIPYAAGVIV PLALTFLVQK SKKEKKRGVV VDVGGEPGYA IRNHRFTEPV SSHWEHISTL PELFEISCNA HSDRVFLGTR KLISREIETS EDGKTFEKLH
101: LGDYEWLTFG KTLEAVCDFA SGLVQIGHKT EERVAIFADT REEWFISLQG CFRRNVTVVT IYSSLGEEAL CHSLNETEVT TVICGSKELK KLMDISQQLE
201: TVKRVICMDD EFPSDVNSNW MATSFTDVQK LGRENPVDPN FPLSADVAVI MYTSGSTGLP KGVMMTHGNV LATVSAVMTI VPDLGKRDIY MAYLPLAHIL
301: ELAAESVMAT IGSAIGYGSP LTLTDTSNKI KKGTKGDVTA LKPTIMTAVP AILDRVRDGV RKKVDAKGGL SKKLFDFAYA RRLSAINGSW FGAWGLEKLL
401: WDVLVFRKIR AVLGGQIRYL LSGGAPLSGD TQRFINICVG APIGQGYGLT ETCAGGTFSE FEDTSVGRVG APLPCSFVKL VDWAEGGYLT SDKPMPRGEI
501: VIGGSNITLG YFKNEEKTKE VYKVDEKGMR WFYTGDIGRF HPDGCLEIID RKKDIVKLQH GEYVSLGKVE AALSISPYVE NIMVHADSFY SYCVALVVAS
601: QHTVEGWASK QGIDFANFEE LCTKEQAVKE VYASLVKAAK QSRLEKFEIP AKIKLLASPW TPESGLVTAA LKLKRDVIRR EFSEDLTKLY A

Arabidopsis Description

LACS9Long chain acyl-CoA synthetase 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAP8]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.