CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052399_P007	Maize	peroxisome	95.59	95.59
Zm00001d005019_P004	Maize	plasma membrane	95.18	95.18
Os05t0317200-01	Rice	plastid	88.98	88.98
TraesCS5D01G174000.1	Wheat	peroxisome	86.64	86.4
TraesCS5B01G166400.1	Wheat	golgi	86.64	86.4
TraesCS5A01G169600.1	Wheat	golgi	86.5	86.26
HORVU5Hr1G052100.13	Barley	peroxisome	86.78	85.71
VIT_12s0057g01270.t01	Wine grape	peroxisome	69.83	70.51
CDY15082	Canola	peroxisome	68.46	69.41
Bra013210.1-P	Field mustard	peroxisome	68.59	69.07
CDY66248	Canola	peroxisome	68.46	68.93
KRG89995	Soybean	endoplasmic reticulum, mitochondrion	68.59	68.69
KRG89997	Soybean	endoplasmic reticulum	63.5	68.4
Solyc07g045290.2.1	Tomato	plastid	68.32	68.32
PGSC0003DMT400044860	Potato	peroxisome	68.18	68.18
AT2G04350.1	Thale cress	peroxisome	67.22	67.78
KRH17725	Soybean	peroxisome	67.63	67.72
PGSC0003DMT400000868	Potato	peroxisome	67.49	67.03
Solyc12g009040.1.1	Tomato	plastid	65.56	66.3
TraesCS3B01G570800.1	Wheat	peroxisome	18.18	64.39
KXG23059	Sorghum	endoplasmic reticulum	60.88	63.32
OQU82968	Sorghum	endoplasmic reticulum, plasma membrane	60.74	63.27
EES01192	Sorghum	peroxisome	30.17	33.44
EES01271	Sorghum	peroxisome	30.44	33.38
KXG28707	Sorghum	peroxisome	30.17	32.93
OQU75859	Sorghum	peroxisome	29.34	32.82
KXG19348	Sorghum	peroxisome	29.06	32.51
EES15543	Sorghum	peroxisome	30.03	31.96
KXG27718	Sorghum	peroxisome	29.75	30.99
KXG21217	Sorghum	peroxisome	28.1	30.45
OQU82479	Sorghum	peroxisome	29.34	29.46
KXG27302	Sorghum	cytosol	1.93	25.93
KXG37146	Sorghum	plastid	21.9	21.54

Protein Annotations

Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:50.6.2	UniProt:A0A1B6PPQ8	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
GO:GO:0001676	GO:GO:0003674	GO:GO:0003824	GO:GO:0004467	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009536	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
ProteinID:KXG27639.1	EnsemblPlants:KXG27640	ProteinID:KXG27640	ProteinID:KXG27640.1	ProteinID:KXG27641.1	PFAM:PF00501
ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF30	EnsemblPlantsGene:SORBI_3005G020300	SUPFAM:SSF56801	TMHMM:TMhelix
UniParc:UPI0001C8064D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:1889260..1897289

Molecular Weight (calculated)

80055.5 Da

IEP (calculated)

7.728

GRAVY (calculated)

-0.131

Length

726 amino acids

Sequence
(BLAST)

001: MGEVSDDNSN MSFLKRIATS DVPLLKEYGV NGVVVALLLA VVTPILLSMM FGKKTKQRAV RADVGGEEGF AMRNSRFPSL VAVPWEGATT MAALFEMASK
101: KYSRRRCLGT RKLIKREFIE SSDGRKFEKL HLGEYEWDTY TEAFNRACNF ASGLIKMGHD LDSHAAIFSD TRAEWIIAAQ GCFRQNLTVV TIYASLGEDA
201: LVHSLNETQV STLICDSKQL KKIPAISSKL QSLKHIIYIE DEPVEAETLN QVKHLTTLSF TEVEELGKTS HVDARLPSSS DTAVIMYTSG STGLPKGVMI
301: THGNMVATTA AVMTIVPNLG KNDVYLAYLP LAHVFELAAE TVMLASGTAI GYGSALTMTD TSNKIKKGTK GDVSVLNPTL MISVPAILDR IRDAVFKKVG
401: EKGGLTKKLF DFAYKRNLAA IEGSWFGSWA PERMIWDNII YKPIRAMLGG RVRFVLCGGA PLSSDTQRFM NICLGVPVGQ GYGLTETCAG AAFTEWDDTS
501: VGRVGPPLPC SYVKLVSWEE GGYRISDSPM PRGEVVVGGH SITKGYFNNE AKTNEVYKVD ERGIRWFYTG DIGQFHPDGC LEIIDRKKDI VKLQHGEYVS
601: LGKVESALAT SNYVENIMVY ADPFHSYCVA LVVPAHQALE KWAQNSGINY KGFEELCQND QANKEVQQSL SKAAKAARLE KFEVPAKIML LPEPWTPESG
701: LVTAALKLKR EQIKTKFKDD LDKLYH

Best Arabidopsis Sequence Match ( AT2G04350.1 )
(BLAST)

001: MEDSGVNPMD SPSKGSDFGV YGIIGGGIVA LLVPVLLSVV LNGTKKGKKR GVPIKVGGEE GYTMRHARAP ELVDVPWEGA ATMPALFEQS CKKYSKDRLL
101: GTREFIDKEF ITASDGRKFE KLHLGEYKWQ SYGEVFERVC NFASGLVNVG HNVDDRVAIF SDTRAEWFIA FQGCFRQSIT VVTIYASLGE EALIYSLNET
201: RVSTLICDSK QLKKLSAIQS SLKTVKNIIY IEEDGVDVAS SDVNSMGDIT VSSISEVEKL GQKNAVQPIL PSKNGVAVIM FTSGSTGLPK GVMITHGNLV
301: ATAAGVMKVV PKLDKNDTYI AYLPLAHVFE LEAEIVVFTS GSAIGYGSAM TLTDTSNKVK KGTKGDVSAL KPTIMTAVPA ILDRVREGVL KKVEEKGGMA
401: KTLFDFAYKR RLAAVDGSWF GAWGLEKMLW DALVFKKIRA VLGGHIRFML VGGAPLSPDS QRFINICMGS PIGQGYGLTE TCAGATFSEW DDPAVGRVGP
501: PLPCGYVKLV SWEEGGYRIS DKPMPRGEIV VGGNSVTAGY FNNQEKTDEV YKVDEKGTRW FYTGDIGRFH PDGCLEVIDR KKDIVKLQHG EYVSLGKVEA
601: ALGSSNYVDN IMVHADPINS YCVALVVPSR GALEKWAEEA GVKHSEFAEL CEKGEAVKEV QQSLTKAGKA AKLEKFELPA KIKLLSEPWT PESGLVTAAL
701: KIKREQIKSK FKDELSKLYA

Arabidopsis Description

LACS8Long chain acyl-CoA synthetase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJD4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.