Factsheet for TraesCS5B01G166400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

peroxisome 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	peroxisome, plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G174000.1	Wheat	peroxisome	99.18	99.18
HORVU5Hr1G052100.13	Barley	peroxisome	96.7	95.78
Os05t0317200-01	Rice	plastid	87.64	87.88
KXG27640	Sorghum	peroxisome	86.4	86.64
Zm00001d052399_P007	Maize	peroxisome	84.07	84.3
Zm00001d005019_P004	Maize	plasma membrane	83.52	83.75
Solyc07g045290.2.1	Tomato	plastid	69.78	69.97
PGSC0003DMT400044860	Potato	peroxisome	69.37	69.56
VIT_12s0057g01270.t01	Wine grape	peroxisome	68.27	69.12
PGSC0003DMT400000868	Potato	peroxisome	68.96	68.67
CDY15082	Canola	peroxisome	66.9	68.02
KRG89995	Soybean	endoplasmic reticulum, mitochondrion	67.72	68.0
Solyc12g009040.1.1	Tomato	plastid	66.9	67.83
KRG89997	Soybean	endoplasmic reticulum	62.77	67.8
KRH17725	Soybean	peroxisome	67.17	67.45
CDY66248	Canola	peroxisome	66.76	67.41
Bra013210.1-P	Field mustard	peroxisome	66.62	67.27
TraesCS3B01G570800.1	Wheat	peroxisome	18.82	66.83
AT2G04350.1	Thale cress	peroxisome	65.52	66.25
TraesCS4B01G110600.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	61.13	63.85
TraesCS5B01G118000.1	Wheat	endoplasmic reticulum	60.03	62.61
TraesCS3B01G266100.1	Wheat	golgi	30.49	33.74
TraesCS7B01G012700.1	Wheat	peroxisome	29.81	33.38
TraesCS5B01G415100.1	Wheat	peroxisome	29.67	32.63
TraesCS5B01G147300.1	Wheat	peroxisome	28.71	31.57
TraesCS4B01G133700.3	Wheat	peroxisome	28.71	30.03
TraesCS1B01G093600.1	Wheat	peroxisome	27.61	30.0
TraesCS5B01G131800.3	Wheat	peroxisome	28.85	29.91
TraesCS5B01G536200.1	Wheat	plastid	20.74	20.83
TraesCS5B01G536300.1	Wheat	mitochondrion, plastid	21.57	20.79

Protein Annotations

EnsemblPlants:TraesCS5B01G166400.1	EnsemblPlantsGene:TraesCS5B01G166400	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF30
PFAM:PF00501	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801	TIGR:cd05927	TMHMM:TMhelix
MapMan:50.6.2	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:308556508..308565783

Molecular Weight (calculated)

79876.8 Da

IEP (calculated)

8.489

GRAVY (calculated)

-0.045

Length

728 amino acids

Sequence
(BLAST)

001: MIMAKSNGEN PNMSILQRLS TSDLPLVKEY GLPGVIGALL LAIVIPILLS SMFSKKVKKR AVQVDVGGEA GLAMRNSRFS SLIQVPWEGA TTMAALFEMA
101: SKKYTQHRCL GTRKLISSEF IEAADGRKFE KLHLGEYQWN SYAEAFKRAC NFASGLIKMG HQLDSRAAIF SDTRAEWIIA AQGCFRQNLT VVTIYASLGE
201: DALVHSLNET QVSTLICDSK QLKKLPAVSS KLHSLKHVIY IEDEPVEADT LNQLKHLTTL SFNAVEELGK TSHADARLPS STDTAVIMYT SGSTGLPKGV
301: MITHGNMVAT IAAVRTIIPN LGTSDVYLAY LPLAHVFELA AESVMLASGV AIGYGSALTM TDASNKIKKG TKGDVSVLKP TLMISVPAIL DRIRDAVFKK
401: VAEKGGITKK LFDVAYKRNL GAIEGSWTGS WAPERFIWNS IIFKPIRAML GGHIRFILCG GAPLSSETQR FINICLGVPV GQGYGLTETC AGAAFSEWDD
501: ISVGRVGPPL PCCYVKLISW EEGGYRISDS PMPRGEVVIG GHSITKGYFN NEAKTNEVYK VDERGIRWFY TGDIGQFHPD GCVEIIDRKK DIVKLQHGEY
601: VSLGKVESAL QTSNYVDNIM VYADPFHSYC VALVVPPHQA LEKWAQNSGI SYKDIEELCH NDQAIKEVQQ SLSKAAKAAR LEKFEIPAKI ILLPEPWTPE
701: SGLVTAALKL KREQLKAKFK DDLNKLYQ

Best Arabidopsis Sequence Match ( AT2G04350.1 )
(BLAST)

001: MEDSGVNPMD SPSKGSDFGV YGIIGGGIVA LLVPVLLSVV LNGTKKGKKR GVPIKVGGEE GYTMRHARAP ELVDVPWEGA ATMPALFEQS CKKYSKDRLL
101: GTREFIDKEF ITASDGRKFE KLHLGEYKWQ SYGEVFERVC NFASGLVNVG HNVDDRVAIF SDTRAEWFIA FQGCFRQSIT VVTIYASLGE EALIYSLNET
201: RVSTLICDSK QLKKLSAIQS SLKTVKNIIY IEEDGVDVAS SDVNSMGDIT VSSISEVEKL GQKNAVQPIL PSKNGVAVIM FTSGSTGLPK GVMITHGNLV
301: ATAAGVMKVV PKLDKNDTYI AYLPLAHVFE LEAEIVVFTS GSAIGYGSAM TLTDTSNKVK KGTKGDVSAL KPTIMTAVPA ILDRVREGVL KKVEEKGGMA
401: KTLFDFAYKR RLAAVDGSWF GAWGLEKMLW DALVFKKIRA VLGGHIRFML VGGAPLSPDS QRFINICMGS PIGQGYGLTE TCAGATFSEW DDPAVGRVGP
501: PLPCGYVKLV SWEEGGYRIS DKPMPRGEIV VGGNSVTAGY FNNQEKTDEV YKVDEKGTRW FYTGDIGRFH PDGCLEVIDR KKDIVKLQHG EYVSLGKVEA
601: ALGSSNYVDN IMVHADPINS YCVALVVPSR GALEKWAEEA GVKHSEFAEL CEKGEAVKEV QQSLTKAGKA AKLEKFELPA KIKLLSEPWT PESGLVTAAL
701: KIKREQIKSK FKDELSKLYA

Arabidopsis Description

LACS8Long chain acyl-CoA synthetase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJD4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.