Factsheet for Solyc12g009040.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000868	Potato	peroxisome	94.15	92.48
Solyc07g045290.2.1	Tomato	plastid	80.64	79.75
VIT_12s0057g01270.t01	Wine grape	peroxisome	71.73	71.63
CDY15082	Canola	peroxisome	68.25	68.44
AT2G04350.1	Thale cress	peroxisome	68.52	68.33
KRG89997	Soybean	endoplasmic reticulum	64.07	68.25
Bra013210.1-P	Field mustard	peroxisome	68.52	68.24
CDY66248	Canola	peroxisome	68.38	68.1
KRG89995	Soybean	endoplasmic reticulum, mitochondrion	68.66	68.0
KRH17725	Soybean	peroxisome	67.83	67.17
Os05t0317200-01	Rice	plastid	67.69	66.94
TraesCS5B01G166400.1	Wheat	golgi	67.83	66.9
TraesCS5D01G174000.1	Wheat	peroxisome	67.69	66.76
TraesCS5A01G169600.1	Wheat	golgi	67.55	66.62
HORVU5Hr1G052100.13	Barley	peroxisome	67.83	66.26
KXG27640	Sorghum	peroxisome	66.3	65.56
Zm00001d005019_P004	Maize	plasma membrane	65.88	65.15
Zm00001d052399_P007	Maize	peroxisome	65.32	64.6
Solyc11g018580.1.1	Tomato	plastid	53.9	63.44
TraesCS3B01G570800.1	Wheat	peroxisome	15.18	53.17
Solyc08g008310.2.1	Tomato	peroxisome	28.83	34.67
Solyc08g082280.2.1	Tomato	nucleus, plastid	30.22	32.98
Solyc01g109180.2.1	Tomato	nucleus	28.97	31.56
Solyc01g095750.2.1	Tomato	peroxisome	28.55	31.01
Solyc01g099100.2.1	Tomato	plastid	27.58	28.45
Solyc09g075790.2.1	Tomato	peroxisome	24.65	28.18
Solyc09g075770.1.1	Tomato	peroxisome	26.6	27.36
Solyc09g092450.2.1	Tomato	plastid	20.33	20.19

Protein Annotations

EnsemblPlants:Solyc12g009040.1.1	EnsemblPlantsGene:Solyc12g009040.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272
PANTHER:PTHR43272:SF30	PFAM:PF00501	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801	TMHMM:TMhelix
UniParc:UPI00027696E4	UniProt:K4DBZ2	MapMan:50.6.2	:	:	:

Description

No Description!

Coordinates

chr12:+:2335997..2339861

Molecular Weight (calculated)

78360.1 Da

IEP (calculated)

8.141

GRAVY (calculated)

-0.149

Length

718 amino acids

Sequence
(BLAST)

001: MEGSEGSDPN TNVVERMDSS CYVSFFKDQE SFGVVAAVVV AIIVPLFLSV VLMRKKKAKQ RGVSVKAGGE AGLTMRNAKS AKLIEVPWEG ATTMAALFER
101: SCRKHSSKRC LGTRKLVSRD FVTAKDGRKF EKLHLSEYHW ESYGQTFDRA CNFASGLVNL GHDVETRAAI FSETRAEWII AFQGCFRQNI TVVTIYASLG
201: DDALIHSLNE TQASTLICDA KQLKKLAAIG SNLKTISNVI YFEDDETSID SSTSTDIDSW RVTSFSEVEK LGKSNPIQPI LPIKKDIAVI MYTSGSTGMP
301: KGVMITHGNI VATAAAVTTV IPKLGSNDVY LGYLPLAHVF ELAAETVMLT AGASIGYGSA LTLTDTSNKI MKGTKGDASA LKPTLMAAVP AILDRVKDGV
401: IKKVEERGGS AKKLFDIAFK RRLTAIEGSW FGALGSRENT MGDIRFMLCG GAPLSRDTQR FINIRLGAPI GQGYGLTETS AGAAFSESDD PSVGRVGPPV
501: PCCYIKLISW EEGGYTVADK PMPRGEVVVG GNSVTAGYFN NGDKTNEEYK VDERGMRWFY TGDIGRFHPD GCLEIIDRKK DIVKLQHGEY ISLGKVEAAL
601: SSSNYVDNIM AYADPFHSYC VALVVPSQKV LEKWAQENGI EHRAFSDLCN KVEAVNEVQQ SLSKVGKAAR LDKFEIPAKI KLIPEPWTPE SGLVTPALKL
701: KREPLKAKFK DELMNLYQ

Best Arabidopsis Sequence Match ( AT2G04350.1 )
(BLAST)

001: MEDSGVNPMD SPSKGSDFGV YGIIGGGIVA LLVPVLLSVV LNGTKKGKKR GVPIKVGGEE GYTMRHARAP ELVDVPWEGA ATMPALFEQS CKKYSKDRLL
101: GTREFIDKEF ITASDGRKFE KLHLGEYKWQ SYGEVFERVC NFASGLVNVG HNVDDRVAIF SDTRAEWFIA FQGCFRQSIT VVTIYASLGE EALIYSLNET
201: RVSTLICDSK QLKKLSAIQS SLKTVKNIIY IEEDGVDVAS SDVNSMGDIT VSSISEVEKL GQKNAVQPIL PSKNGVAVIM FTSGSTGLPK GVMITHGNLV
301: ATAAGVMKVV PKLDKNDTYI AYLPLAHVFE LEAEIVVFTS GSAIGYGSAM TLTDTSNKVK KGTKGDVSAL KPTIMTAVPA ILDRVREGVL KKVEEKGGMA
401: KTLFDFAYKR RLAAVDGSWF GAWGLEKMLW DALVFKKIRA VLGGHIRFML VGGAPLSPDS QRFINICMGS PIGQGYGLTE TCAGATFSEW DDPAVGRVGP
501: PLPCGYVKLV SWEEGGYRIS DKPMPRGEIV VGGNSVTAGY FNNQEKTDEV YKVDEKGTRW FYTGDIGRFH PDGCLEVIDR KKDIVKLQHG EYVSLGKVEA
601: ALGSSNYVDN IMVHADPINS YCVALVVPSR GALEKWAEEA GVKHSEFAEL CEKGEAVKEV QQSLTKAGKA AKLEKFELPA KIKLLSEPWT PESGLVTAAL
701: KIKREQIKSK FKDELSKLYA

Arabidopsis Description

LACS8Long chain acyl-CoA synthetase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJD4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.