Factsheet for Solyc01g109180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
peroxisome 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064817	Potato	peroxisome	98.48	98.48
KRH48841	Soybean	peroxisome	26.4	79.45
VIT_03s0063g01880.t01	Wine grape	peroxisome	76.63	76.63
KRG89197	Soybean	peroxisome	73.75	73.64
KRH49531	Soybean	peroxisome	73.6	73.48
KRH24533	Soybean	peroxisome	72.53	72.87
KRH29538	Soybean	peroxisome	72.38	72.71
GSMUA_Achr7P27390_001	Banana	peroxisome	70.26	70.58
Os11t0558300-01	Rice	peroxisome	69.04	68.84
TraesCS5D01G420300.1	Wheat	golgi	68.89	68.58
KXG28707	Sorghum	peroxisome	68.74	68.12
TraesCS5B01G415100.1	Wheat	peroxisome	68.29	67.98
TraesCS5A01G411500.2	Wheat	golgi	68.44	67.92
AT1G49430.1	Thale cress	peroxisome	68.44	67.82
HORVU5Hr1G099350.15	Barley	peroxisome	68.74	67.81
Zm00001d053127_P005	Maize	mitochondrion	67.98	67.47
CDY59237	Canola	peroxisome	68.13	67.42
CDY29350	Canola	peroxisome	67.83	67.12
Bra032284.1-P	Field mustard	peroxisome	67.83	67.12
Solyc08g082280.2.1	Tomato	nucleus, plastid	57.81	57.9
Solyc08g008310.2.1	Tomato	peroxisome	52.05	57.45
Solyc01g095750.2.1	Tomato	peroxisome	54.63	54.46
Solyc01g099100.2.1	Tomato	plastid	40.82	38.65
AT2G47245.1	Thale cress	endoplasmic reticulum	7.44	37.69
Solyc09g075790.2.1	Tomato	peroxisome	35.36	37.1
Solyc09g075770.1.1	Tomato	peroxisome	38.24	36.1
Solyc11g018580.1.1	Tomato	plastid	28.83	31.15
Solyc07g045290.2.1	Tomato	plastid	32.93	29.89
Solyc12g009040.1.1	Tomato	plastid	31.56	28.97
Solyc09g092450.2.1	Tomato	plastid	23.07	21.02

Protein Annotations

Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	GO:GO:0001676	GO:GO:0003674
GO:GO:0003824	GO:GO:0004467	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0006629	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009506	GO:GO:0009605	GO:GO:0009607	GO:GO:0009653	GO:GO:0009791
GO:GO:0009987	GO:GO:0010143	GO:GO:0010311	GO:GO:0031957	GO:GO:0050832	UniProt:K4B3D1
PFAM:PF00501	ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF4	SUPFAM:SSF56801	EnsemblPlantsGene:Solyc01g109180.2
EnsemblPlants:Solyc01g109180.2.1	UniParc:UPI00027687FD	:	:	:	:

Description

Long chain acyl-CoA synthetase 2 [Source:Projected from Arabidopsis thaliana (AT1G49430) UniProtKB/Swiss-Prot;Acc:Q9XIA9]

Coordinates

chr1:-:96216913..96222550

Molecular Weight (calculated)

74056.9 Da

IEP (calculated)

6.276

GRAVY (calculated)

-0.243

Length

659 amino acids

Sequence
(BLAST)

001: MSNYTVKVEE TRPPSDGKPS AGPVYRNIYA KDGLMEMPTR FESPWDFFSE SVKKNPKNQM LGRRQVVDKK AGPYSWLTYE EVYETTIKIG SAIRNRGVNP
101: GDRCGIYGVN CPEWIMAMEA CNSQAISYVP LYDSLGANAV EFIINHAEVS IAFAQESKIP AILSCLSKCN SYLKTIVSFG NISSTQRSEA EEQGVACFSW
201: EEFVQMGSLD HELPQKRKTD ISSIMYTSGT TGEPKGVILT NGAFMGEVLS MDQLLVETDK EGTGEDVYFS FLPLAHIFDQ IIETYCIYRG ASIGFWQGDI
301: RYLIEDLLVL KPTIFCGVPR VYDRIYTGVM DKIEAGGTLK KLLFQFAYNY KLRNMEKGLR QDEAAPRFDR LVFDKIKLAF GGRVRLMLSG AAPLPKHVEE
401: FLRVTCCCSL SQGYGLTESC GGCLTSIANV HSMTGTVGVP MTTIEARLES VPEMGYDALA SVPRGEICLR GKTLFSGYHK REDLTKSVLV DGWFHTGDIG
501: EWQPDGAMKI IDRKKNIFKL SQGEYVAVEN IEGVYSRCPL VTSIWIYGNS FESFLVAVVV PERKAIEEWA SNNQETGDFS SLCNNTKARK YILDELNSTA
601: RKHQLRGFEM LRAVHLEPNP FDIERELVTP TFKLKRPQLL NYYKDIVDQL YKEAKAKTA

Best Arabidopsis Sequence Match ( AT1G49430.1 )
(BLAST)

001: MSLAADNVLL VEEGRPATAE HPSAGPVYRC KYAKDGLLDL PTDIDSPWQF FSEAVKKYPN EQMLGQRVTT DSKVGPYTWI TYKEAHDAAI RIGSAIRSRG
101: VDPGHCCGIY GANCPEWIIA MEACMSQGIT YVPLYDSLGV NAVEFIINHA EVSLVFVQEK TVSSILSCQK GCSSNLKTIV SFGEVSSTQK EEAKNQCVSL
201: FSWNEFSLMG NLDEANLPRK RKTDICTIMY TSGTTGEPKG VILNNAAISV QVLSIDKMLE VTDRSCDTSD VFFSYLPLAH CYDQVMEIYF LSRGSSVGYW
301: RGDIRYLMDD VQALKPTVFC GVPRVYDKLY AGIMQKISAS GLIRKKLFDF AYNYKLGNMR KGFSQEEASP RLDRLMFDKI KEALGGRAHM LLSGAAPLPR
401: HVEEFLRIIP ASNLSQGYGL TESCGGSFTT LAGVFSMVGT VGVPMPTVEA RLVSVPEMGY DAFSADVPRG EICLRGNSMF SGYHKRQDLT DQVLIDGWFH
501: TGDIGEWQED GSMKIIDRKK NIFKLSQGEY VAVENLENTY SRCPLIAQIW VYGNSFESFL VGVVVPDRKA IEDWAKLNYQ SPNDFESLCQ NLKAQKYFLD
601: ELNSTAKQYQ LKGFEMLKAI HLEPNPFDIE RDLITPTFKL KRPQLLQHYK GIVDQLYSEA KRSMA

Arabidopsis Description

LACS2Long chain acyl-CoA synthetase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIA9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.