Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 4
- golgi 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G47240.2 | Thale cress | peroxisome | 53.08 | 10.45 |
| PGSC0003DMT400064817 | Potato | peroxisome | 38.46 | 7.59 |
| Solyc01g109180.2.1 | Tomato | nucleus | 37.69 | 7.44 |
| KXG28707 | Sorghum | peroxisome | 36.15 | 7.07 |
| GSMUA_Achr7P27390_001 | Banana | peroxisome | 35.38 | 7.01 |
| AT1G64400.1 | Thale cress | cytosol, peroxisome, plastid | 35.38 | 6.92 |
| Os11t0558300-01 | Rice | peroxisome | 34.62 | 6.81 |
| Zm00001d053127_P005 | Maize | mitochondrion | 34.62 | 6.78 |
| AT4G11030.1 | Thale cress | peroxisome | 34.62 | 6.76 |
| AT4G23850.1 | Thale cress | peroxisome | 33.85 | 6.61 |
| VIT_03s0063g01880.t01 | Wine grape | peroxisome | 33.08 | 6.53 |
| HORVU5Hr1G099350.15 | Barley | peroxisome | 33.08 | 6.44 |
| TraesCS5D01G420300.1 | Wheat | golgi | 32.31 | 6.34 |
| AT1G49430.1 | Thale cress | peroxisome | 32.31 | 6.32 |
| TraesCS5A01G411500.2 | Wheat | golgi | 31.54 | 6.17 |
| TraesCS5B01G415100.1 | Wheat | peroxisome | 30.77 | 6.04 |
| AT3G05970.1 | Thale cress | plastid | 29.23 | 5.42 |
| AT5G27600.1 | Thale cress | peroxisome, plastid | 26.15 | 4.86 |
| AT1G77590.1 | Thale cress | peroxisome, plastid | 18.46 | 3.47 |
| AT2G04350.1 | Thale cress | peroxisome | 19.23 | 3.47 |
| AT3G23790.1 | Thale cress | plastid | 19.23 | 3.46 |
| AT4G14070.1 | Thale cress | plastid | 18.46 | 3.3 |
Protein Annotations
| ArrayExpress:AT2G47245 | EnsemblPlants:AT2G47245.1 | EnsemblPlantsGene:AT2G47245 | EntrezGene:28718361 | PANTHER:PTHR43272 | PANTHER:PTHR43272:SF6 |
| ProteinID:ANM63044.1 | RefSeq:NP_001325158.1 | UniParc:UPI000848388B | UniProt:A0A1P8B2A8 | MapMan:35.1 | : |
Description
Long chain acyl-CoA synthetase [Source:UniProtKB/TrEMBL;Acc:A0A1P8B2A8]
Coordinates
chr2:+:19398184..19399097
Molecular Weight (calculated)
15250.5 Da
IEP (calculated)
9.397
GRAVY (calculated)
-0.298
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLQHIFIST ILFNNLNIRL RIFTISEICN IYVQSSFKGK HKRERENEVF LSSAGPVYRN LLSEKGFPPR DSDIITTWDI FSKSVEKFPD NKMLGWRQIV
101: DEKVGPYMWK TYKEVYEEVL LIGSALRAGE
101: DEKVGPYMWK TYKEVYEEVL LIGSALRAGE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.