Factsheet for Zm00001d053127_P005

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 2
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, peroxisome
iPSORT:	mitochondrion
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG28707	Sorghum	peroxisome	93.98	93.83
Os11t0558300-01	Rice	peroxisome	83.13	83.51
TraesCS5D01G420300.1	Wheat	golgi	82.83	83.08
TraesCS5A01G411500.2	Wheat	golgi	82.83	82.83
TraesCS5B01G415100.1	Wheat	peroxisome	82.53	82.78
HORVU5Hr1G099350.15	Barley	peroxisome	82.53	82.04
KRH48841	Soybean	peroxisome	23.49	71.23
GSMUA_Achr7P27390_001	Banana	peroxisome	68.98	69.82
PGSC0003DMT400064817	Potato	peroxisome	67.92	68.44
Solyc01g109180.2.1	Tomato	nucleus	67.47	67.98
VIT_03s0063g01880.t01	Wine grape	peroxisome	65.21	65.71
KRG89197	Soybean	peroxisome	64.76	65.15
KRH49531	Soybean	peroxisome	64.61	65.0
KRH29538	Soybean	peroxisome	63.86	64.63
KRH24533	Soybean	peroxisome	63.55	64.33
AT1G49430.1	Thale cress	peroxisome	62.05	61.95
CDY59237	Canola	peroxisome	60.99	60.81
CDY29350	Canola	peroxisome	60.84	60.66
Bra032284.1-P	Field mustard	peroxisome	60.84	60.66
Zm00001d044016_P001	Maize	mitochondrion	56.63	57.4
Zm00001d043851_P001	Maize	mitochondrion	56.93	56.93
Zm00001d045295_P001	Maize	extracellular	54.52	53.63
Zm00001d024723_P001	Maize	peroxisome	48.34	47.91
Zm00001d010943_P001	Maize	peroxisome	8.58	40.43
Zm00001d023238_P002	Maize	plasma membrane	39.01	37.48
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	38.7	36.93
AT2G47245.1	Thale cress	endoplasmic reticulum	6.78	34.62
Zm00001d005019_P004	Maize	plasma membrane	33.28	30.44
Zm00001d052399_P007	Maize	peroxisome	32.53	29.75
Zm00001d053009_P009	Maize	plastid	31.17	29.66
Zm00001d023538_P002	Maize	plastid	31.02	29.51
Zm00001d034832_P006	Maize	plastid	23.49	19.55

Protein Annotations

EntrezGene:100281785	Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ProteinID:AQK58797.1
UniProt:B6SYY5	EMBL:BT085876	EMBL:EU957950	GO:GO:0001676	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	PFAM:PF00501	ScanProsite:PS00455
PANTHER:PTHR43272	PANTHER:PTHR43272:SF4	SUPFAM:SSF56801	UniParc:UPI000182BF3A	EnsemblPlantsGene:Zm00001d053127	EnsemblPlants:Zm00001d053127_P005
EnsemblPlants:Zm00001d053127_T005	:	:	:	:	:

Description

Long chain acyl-CoA synthetase 2

Coordinates

chr4:+:214702095..214710403

Molecular Weight (calculated)

73992.3 Da

IEP (calculated)

7.146

GRAVY (calculated)

-0.152

Length

664 amino acids

Sequence
(BLAST)

001: MSMPETFTLK VGEATPAAAG RPSAGPVYRS IYAKDGLMDL PQDIQSPWDL FSGAVKKYPT NRMVGQRQVT DGKAGEYVWQ TYEEVCQKVM RIGSAIRSLG
101: VEPGAHCGIY GSNCPEWVMA MQACNSQGIC YVPLYDTLGA KAVEFIMYHA EISIAFVQES KIKSILAVLP KCTAHLRAIV SFGDFASEMK AEAERLGVSC
201: FSWEEFSSMG KQDYQLPNKR KEDICTIMYT SGTTGDPKGV IITNKAIVAG VMTTEHLLKE TDKVITEEDS YFSYLPLAHI FDQVIENYCI SKGASIGFWQ
301: GDIRYLMEDV QVMKPTIFCG VPRVYDRIYT GINMKIQSGG MIARHLFQYA YNYKLANMRK GLKQHEASPF FDKIVFSKIK EGLGGRIRLM IAGAAPLPGQ
401: IEEFMRVTTC SVVVQGYGLT ESCAGCFTSI ANIFSMIGTV GPPVTTIEAR LESVPEMGYD ALSDTPRGEI CLRGHTMFSG YYKRPSLTEE VFSDGWFHTG
501: DIGEWQSNGT MKIIDRKKNI FKLSQGEYVA VEVLERAYLQ SPLVASVWVY GNSFESFLVA VAVPERQALE EWAAANSKAG DFAELCADPK ARTYVRDQLN
601: QTGKKLGLRG FEMLKAVYLE PVPFSIEKDL VTPTFKLKRP QLLKYYKDRV DQMYKDAKEG RAAP

Best Arabidopsis Sequence Match ( AT1G49430.1 )
(BLAST)

001: MSLAADNVLL VEEGRPATAE HPSAGPVYRC KYAKDGLLDL PTDIDSPWQF FSEAVKKYPN EQMLGQRVTT DSKVGPYTWI TYKEAHDAAI RIGSAIRSRG
101: VDPGHCCGIY GANCPEWIIA MEACMSQGIT YVPLYDSLGV NAVEFIINHA EVSLVFVQEK TVSSILSCQK GCSSNLKTIV SFGEVSSTQK EEAKNQCVSL
201: FSWNEFSLMG NLDEANLPRK RKTDICTIMY TSGTTGEPKG VILNNAAISV QVLSIDKMLE VTDRSCDTSD VFFSYLPLAH CYDQVMEIYF LSRGSSVGYW
301: RGDIRYLMDD VQALKPTVFC GVPRVYDKLY AGIMQKISAS GLIRKKLFDF AYNYKLGNMR KGFSQEEASP RLDRLMFDKI KEALGGRAHM LLSGAAPLPR
401: HVEEFLRIIP ASNLSQGYGL TESCGGSFTT LAGVFSMVGT VGVPMPTVEA RLVSVPEMGY DAFSADVPRG EICLRGNSMF SGYHKRQDLT DQVLIDGWFH
501: TGDIGEWQED GSMKIIDRKK NIFKLSQGEY VAVENLENTY SRCPLIAQIW VYGNSFESFL VGVVVPDRKA IEDWAKLNYQ SPNDFESLCQ NLKAQKYFLD
601: ELNSTAKQYQ LKGFEMLKAI HLEPNPFDIE RDLITPTFKL KRPQLLQHYK GIVDQLYSEA KRSMA

Arabidopsis Description

LACS2Long chain acyl-CoA synthetase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIA9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.