Factsheet for VIT_03s0063g01880.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48841	Soybean	peroxisome	26.71	80.37
PGSC0003DMT400064817	Potato	peroxisome	76.93	76.93
Solyc01g109180.2.1	Tomato	nucleus	76.63	76.63
KRH24533	Soybean	peroxisome	76.18	76.52
KRH29538	Soybean	peroxisome	75.11	75.46
KRG89197	Soybean	peroxisome	75.27	75.15
KRH49531	Soybean	peroxisome	75.11	75.0
GSMUA_Achr7P27390_001	Banana	peroxisome	72.38	72.71
CDY59237	Canola	peroxisome	68.59	67.87
Bra032284.1-P	Field mustard	peroxisome	68.44	67.72
CDY29350	Canola	peroxisome	68.44	67.72
Os11t0558300-01	Rice	peroxisome	67.83	67.62
AT1G49430.1	Thale cress	peroxisome	67.68	67.07
KXG28707	Sorghum	peroxisome	67.22	66.62
TraesCS5B01G415100.1	Wheat	peroxisome	65.71	65.41
Zm00001d053127_P005	Maize	mitochondrion	65.71	65.21
TraesCS5A01G411500.2	Wheat	golgi	65.71	65.21
TraesCS5D01G420300.1	Wheat	golgi	65.4	65.11
HORVU5Hr1G099350.15	Barley	peroxisome	65.55	64.67
VIT_02s0025g01410.t01	Wine grape	peroxisome	59.48	59.21
VIT_07s0005g01790.t01	Wine grape	peroxisome	47.5	47.28
VIT_05s0020g03080.t01	Wine grape	peroxisome	38.09	36.01
VIT_14s0128g00720.t01	Wine grape	peroxisome	34.45	35.86
AT2G47245.1	Thale cress	endoplasmic reticulum	6.53	33.08
VIT_18s0001g02810.t01	Wine grape	vacuole	30.05	28.41
VIT_12s0057g01270.t01	Wine grape	peroxisome	30.65	28.09
VIT_08s0032g00050.t01	Wine grape	plastid	23.07	20.82

Protein Annotations

EntrezGene:100257137	wikigene:100257137	Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-bd_C	InterPro:AMP-binding_CS
InterPro:AMP-dep_Synth/Lig	ProteinID:CBI32531	ProteinID:CBI32531.3	UniProt:D7TPV8	EMBL:FN596006	GO:GO:0001676
GO:GO:0003674	GO:GO:0003824	GO:GO:0004467	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0006629	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009506	GO:GO:0009605	GO:GO:0009607	GO:GO:0009653
GO:GO:0009791	GO:GO:0009987	GO:GO:0010143	GO:GO:0010311	GO:GO:0031957	GO:GO:0050832
EntrezGene:LOC100257137	wikigene:LOC100257137	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR43272
PANTHER:PTHR43272:SF4	SUPFAM:SSF56801	UniParc:UPI0001982E84	ArrayExpress:VIT_03s0063g01880	EnsemblPlantsGene:VIT_03s0063g01880	EnsemblPlants:VIT_03s0063g01880.t01
unigene:Vvi.21507	RefSeq:XP_002281151	RefSeq:XP_002281151.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:5204558..5212681

Molecular Weight (calculated)

73805.4 Da

IEP (calculated)

5.207

GRAVY (calculated)

-0.208

Length

659 amino acids

Sequence
(BLAST)

001: MAVYTVKVAD SIPATEERPS AGPVYRCIYA ENGLLEVPKG MESPWEFFSD SVERNPKNQM LGRRQIINSK AGPYVWLTYR EAYDAALRMG SAMRSRGVNP
101: GDRCGIYGSN CPEWIIAMEA CNSQAIPYVP LYDSLGANAV EFIINHAEVS IAFVQESKIP AMLTCLPKCT SYLKTIISFG KISSSQKEEA EELGVSCFSW
201: EEFALLGSLD CELPPKQKTD ICTIMYTSGT TGEPKGVVLS NEAIMAEVLS TDQLLLETDK VATEEDTYFS FLPLAHVFDQ IMETYCIYKG SSIGFWGADV
301: RYLMEDIQEL KPTIFCGVPR VYERIYGGAI AKISSGGALR KALFQYAYNY KLRNLEKGLR QDEAAPRLDR LIFDKIKQGF GGRVRLLFSG AAPLSRHVEE
401: FLRVTSCSVL SQGYGLTESC GGCLTSIVNE FSMMGTVGVP YPTIEARLES VPEMGYDALS NVPRGEICLR GKTLFSGYFK RQDLTESALV DGWFHTGDIG
501: EWQPNGAMKI IDRKKNIFKL SQGEYVAVEN LENTYSRCPL ITSIWVYGNS FESFLVAVVV PDKKALEDWA ENHNVTGDFK SLCENLEARK YILDELNNTG
601: QNHQLKGFER LKAVHLDPNP FDIERDLVTP TFKLKRPQLL KYYKDIIDRL YSEAKGTKS

Best Arabidopsis Sequence Match ( AT1G49430.1 )
(BLAST)

001: MSLAADNVLL VEEGRPATAE HPSAGPVYRC KYAKDGLLDL PTDIDSPWQF FSEAVKKYPN EQMLGQRVTT DSKVGPYTWI TYKEAHDAAI RIGSAIRSRG
101: VDPGHCCGIY GANCPEWIIA MEACMSQGIT YVPLYDSLGV NAVEFIINHA EVSLVFVQEK TVSSILSCQK GCSSNLKTIV SFGEVSSTQK EEAKNQCVSL
201: FSWNEFSLMG NLDEANLPRK RKTDICTIMY TSGTTGEPKG VILNNAAISV QVLSIDKMLE VTDRSCDTSD VFFSYLPLAH CYDQVMEIYF LSRGSSVGYW
301: RGDIRYLMDD VQALKPTVFC GVPRVYDKLY AGIMQKISAS GLIRKKLFDF AYNYKLGNMR KGFSQEEASP RLDRLMFDKI KEALGGRAHM LLSGAAPLPR
401: HVEEFLRIIP ASNLSQGYGL TESCGGSFTT LAGVFSMVGT VGVPMPTVEA RLVSVPEMGY DAFSADVPRG EICLRGNSMF SGYHKRQDLT DQVLIDGWFH
501: TGDIGEWQED GSMKIIDRKK NIFKLSQGEY VAVENLENTY SRCPLIAQIW VYGNSFESFL VGVVVPDRKA IEDWAKLNYQ SPNDFESLCQ NLKAQKYFLD
601: ELNSTAKQYQ LKGFEMLKAI HLEPNPFDIE RDLITPTFKL KRPQLLQHYK GIVDQLYSEA KRSMA

Arabidopsis Description

LACS2Long chain acyl-CoA synthetase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIA9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.