Factsheet for VIT_14s0128g00720.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
peroxisome 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0015g01940.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27600.1	VIT_19s0015g01940.t01	AT5G56290.1	16256065

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099100.2.1	Tomato	plastid	79.62	72.41
VIT_05s0020g03080.t01	Wine grape	peroxisome	78.67	71.45
AT5G27600.1	Thale cress	peroxisome, plastid	75.36	68.14
CDX80638	Canola	peroxisome	74.09	67.1
Bra009951.1-P	Field mustard	peroxisome	73.78	66.91
CDX86151	Canola	peroxisome	73.78	66.81
EES15543	Sorghum	peroxisome	70.93	65.84
Os12t0143900-01	Rice	peroxisome	72.99	65.35
Zm00001d023238_P002	Maize	plasma membrane	71.25	65.27
TraesCS5B01G131800.3	Wheat	peroxisome	71.88	64.81
TraesCS5A01G133200.2	Wheat	peroxisome	71.41	64.39
TraesCS4A01G184900.2	Wheat	peroxisome	70.62	64.22
TraesCS5D01G141300.1	Wheat	peroxisome	71.09	64.1
TraesCS4B01G133700.3	Wheat	peroxisome	70.46	64.08
TraesCS4D01G128700.3	Wheat	mitochondrion	70.46	64.08
KXG27718	Sorghum	peroxisome	70.46	63.99
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	70.14	63.79
Os11t0147000-01	Rice	peroxisome	71.25	63.61
HORVU5Hr1G040740.17	Barley	peroxisome	71.56	63.36
PGSC0003DMT400063438	Potato	peroxisome	8.69	59.78
HORVU4Hr1G025820.9	Barley	peroxisome, plastid	69.67	58.8
VIT_07s0005g01790.t01	Wine grape	peroxisome	37.12	35.5
VIT_02s0025g01410.t01	Wine grape	peroxisome	36.18	34.59
VIT_03s0063g01880.t01	Wine grape	peroxisome	35.86	34.45
VIT_18s0001g02810.t01	Wine grape	vacuole	30.02	27.26
VIT_12s0057g01270.t01	Wine grape	peroxisome	30.65	26.98
VIT_08s0032g00050.t01	Wine grape	plastid	25.43	22.05

Protein Annotations

Gene3D:3.40.50.12780	MapMan:5.7.3.1	EMBL:AM437259	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ProteinID:CAN82622
ProteinID:CAN82622.1	ProteinID:CBI36794	ProteinID:CBI36794.3	UniProt:D7U228	EMBL:FN596501	GO:GO:0003674
GO:GO:0003824	GO:GO:0004467	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0006629	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628
GO:GO:0009651	GO:GO:0009987	GO:GO:0010193	PFAM:PF00501	ScanProsite:PS00455	PANTHER:PTHR43272
PANTHER:PTHR43272:SF17	SUPFAM:SSF56801	UniParc:UPI00015C9A0F	ArrayExpress:VIT_14s0128g00720	EnsemblPlantsGene:VIT_14s0128g00720	EnsemblPlants:VIT_14s0128g00720.t01

Description

No Description!

Coordinates

chr14:+:3245301..3268905

Molecular Weight (calculated)

69778.2 Da

IEP (calculated)

7.030

GRAVY (calculated)

-0.025

Length

633 amino acids

Sequence
(BLAST)

001: MESTAQRRLK AIQGHLVPIT HVLDSHVQTS TTASEFFHSQ GYSVVLPEKL NTGKWNVYRS VRSPLKLISR LPEHPEIGTL HDNFMHAIEA FKDYNYLGTR
101: VRGDGTVGEY KWMTYGEAGT VRLAIGSGLR HHGLLEGACI GLYFINRPEW LIVDHACSAY SYISVPLYDT LGPDAVKYIV NHADVQAIFC LPHTLNTLLS
201: FLSEIPSVRL VVVVGGIDEH VPSLPSNSQV KLISFAKLLS QGHSDLQPFC PPKPEDIATI CYTSGTTGTP KGVILTHGNL IATIAGASLT LKFCPSDIYI
301: SYLPLAHIYE RANQVLLAYY GGAVGFYQGD NLKLMDDLAA LRPTIFCSVP RLYNRIYSGI MNAVQTSGVL RKTLFNAAYN SKKQVIISGR NPSPMWDRLV
401: FSKIKGMLGG RVHFMGSGAS PLSPDVMDFL RVCFGCQVIE GYGMTETSCL ISCMDKGDNL SGHVGSPNPA CEIKLVDVPE MNYTSEDQPY PRGEICVRGP
501: VLFQGYYKDE VQTKEVIDGD GWLHTGDIGL WLPGGRLKII DRKKNIFKLA QGEYIAPEKI ENVYAKCKFV SQCFIYGDSL NSCLVAIVSV DPDVLKDWAT
601: SEAIKYENLG HLCNDPRARA AVLTEMDAIG REA

Best Arabidopsis Sequence Match ( AT5G27600.1 )
(BLAST)

001: MEFASPEQRR LETIRSHIDT SPTNDQSSSL FLNATASSAS PFFKEDSYSV VLPEKLDTGK WNVYRSKRSP TKLVSRFPDH PEIGTLHDNF VHAVETYAEN
101: KYLGTRVRSD GTIGEYSWMT YGEAASERQA IGSGLLFHGV NQGDCVGLYF INRPEWLVVD HACAAYSFVS VPLYDTLGPD AVKFVVNHAN LQAIFCVPQT
201: LNILLSFLAE IPSIRLIVVV GGADEHLPSL PRGTGVTIVS YQKLLSQGRS SLHPFSPPKP EDIATICYTS GTTGTPKGVV LTHGNLIANV AGSSVEAEFF
301: PSDVYISYLP LAHIYERANQ IMGVYGGVAV GFYQGDVFKL MDDFAVLRPT IFCSVPRLYN RIYDGITSAV KSSGVVKKRL FEIAYNSKKQ AIINGRTPSA
401: FWDKLVFNKI KEKLGGRVRF MGSGASPLSP DVMDFLRICF GCSVREGYGM TETSCVISAM DDGDNLSGHV GSPNPACEVK LVDVPEMNYT SDDQPYPRGE
501: ICVRGPIIFK GYYKDEEQTR EILDGDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY TKCRFVSQCF IHGDSFNSSL VAIVSVDPEV
601: MKDWAASEGI KYEHLGQLCN DPRVRKTVLA EMDDLGREAQ LRGFEFAKAV TLVPEPFTLE NGLLTPTFKI KRPQAKAYFA EAISKMYAEI AASNPIPSKL

Arabidopsis Description

LACS7Long chain acyl-CoA synthetase 7, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LKS5]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.