Factsheet for Os12t0143900-01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
mitochondrion 2
peroxisome 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0500100-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27600.1	Os08t0500100-02	AT5G56290.1	16256065

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0147000-01	Rice	peroxisome	88.83	88.58
TraesCS5B01G131800.3	Wheat	peroxisome	87.27	87.89
TraesCS5A01G133200.2	Wheat	peroxisome	86.85	87.46
TraesCS5D01G141300.1	Wheat	peroxisome	86.56	87.18
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	84.16	85.49
EES15543	Sorghum	peroxisome	82.46	85.48
KXG27718	Sorghum	peroxisome	83.88	85.08
Zm00001d023238_P002	Maize	plasma membrane	82.6	84.52
HORVU5Hr1G040740.17	Barley	peroxisome	83.59	82.66
GSMUA_Achr8P24080_001	Banana	mitochondrion	72.84	75.74
Solyc01g099100.2.1	Tomato	plastid	73.83	75.0
VIT_05s0020g03080.t01	Wine grape	peroxisome	73.55	74.61
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	72.56	73.71
KRG91264	Soybean	peroxisome	72.7	73.64
AT3G05970.1	Thale cress	plastid	72.42	73.04
Bra001177.1-P	Field mustard	plastid	71.85	72.99
VIT_14s0128g00720.t01	Wine grape	peroxisome	65.35	72.99
CDX74115	Canola	plastid	71.71	72.84
CDY49993	Canola	mitochondrion	71.43	72.56
CDY05217	Canola	plastid	70.3	72.34
CDY27725	Canola	plastid	70.16	72.2
Bra020793.1-P	Field mustard	plastid	64.22	72.18
CDX80638	Canola	peroxisome	70.58	71.39
Bra009951.1-P	Field mustard	peroxisome	70.44	71.35
CDX86151	Canola	peroxisome	70.44	71.24
Solyc09g075790.2.1	Tomato	peroxisome	63.22	71.18
AT5G27600.1	Thale cress	peroxisome, plastid	70.3	71.0
CDX92843	Canola	peroxisome	21.36	70.56
Solyc09g075770.1.1	Tomato	peroxisome	65.49	66.33
PGSC0003DMT400063438	Potato	peroxisome	7.21	55.43
CDY65251	Canola	peroxisome	17.96	54.27
KRH13185	Soybean	cytosol	37.91	42.88
Os01t0681200-01	Rice	plasma membrane	38.05	40.45
Os06t0158000-01	Rice	plasma membrane	34.51	39.67
Os11t0558300-01	Rice	peroxisome	36.63	39.18
Os01t0655800-01	Rice	plasma membrane	37.06	38.53
Os05t0132100-02	Rice	plasma membrane	35.64	37.67
Os11t0169800-01	Rice	plastid	19.24	37.47
Os12t0168700-01	Rice	vacuole	29.42	29.8
Os05t0317200-01	Rice	plastid	30.41	29.61
GSMUA_AchrUn_...	Banana	peroxisome	4.81	26.98
Os03t0845500-01	Rice	plastid	23.76	22.4

Protein Annotations

Gene3D:3.40.50.12780	EntrezGene:4351483	MapMan:5.7.3.1	ProteinID:ABA96459.1	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
ProteinID:BAF29158.1	ProteinID:BAT15866.1	ProteinID:EEE52757.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	EnsemblPlantsGene:Os12g0143900	EnsemblPlants:Os12t0143900-01	PFAM:PF00501	ScanProsite:PS00455	PANTHER:PTHR43272
PANTHER:PTHR43272:SF17	UniProt:Q2QXT1	SUPFAM:SSF56801	UniParc:UPI0000681A60	RefSeq:XP_015620538.1	SEG:seg

Description

LONG-CHAIN ACYL-COA SYNTHETASE 7Similar to Long chain acyl-CoA synthetase 6 (EC 6.2.1.3). (Os12t0143900-01)

Coordinates

chr12:-:2161664..2170063

Molecular Weight (calculated)

77904.7 Da

IEP (calculated)

7.821

GRAVY (calculated)

-0.132

Length

707 amino acids

Sequence
(BLAST)

001: MARQQQQREE ERAPMGAAQR RLRAVSGHLQ PPTESGGVDL AANPTAGEYA HVQGYSAVLP EKLQTGKWNV YRSAKSPLKL INRFPDNPDI GTLHDNFVYA
101: VETFRDCRYL GTRVCVDGTV GDYKWMTYGE ASTSRTAIGS GLIYHGIPEG ARIGLYFINR PEWTIVDHAC AAYSYVSVPL YDTLGPDAVQ FIVNHATVQA
201: IFCVPQTLST LLSFITQMPC VRLIVVIGGD NANMPSTPTA TGVEIITYSR LLSQGKMSSQ SFRPPKPEDI ATICYTSGTT GTPKGVVLSH GNLIANVAGS
301: SLVIKFYPSD VYISYLPLAH IYERVNQVSV VHYGVAIGFY QGDNLKLMDD LAALRPTVFP SVPRLYNRIY AAITNAVKES GGLKERLFHA AYNAKRQAII
401: NGRNPSPMWD RLVFNKIKAR LGGRVRLMTS GASPLSADVM EFLRICFGGE VLEGYGMTET SCIISAMNIG DRLIGHVGSP NPSCEIKLVD VPEMNYTSED
501: EPYPRGEICV RGPTIFCGYY KDEIQTREAV DEDGWLHTGD IGLWMPGGRL KIIDRKKNIF KLAQGEYIAP EKIENVYAKC KFIAQSFIYG DSLNSSLVAV
601: VAVEPDVLKA WAASEGIQHE DLRQLCADPK ARSAVLAEMD SIGKEAQLRG FEFAKAVTLV AEPFTLENGL LTPTFKVKRP QAKAYFAKEI ADMYAQLRQA
701: EQIKPKL

Best Arabidopsis Sequence Match ( AT3G05970.1 )
(BLAST)

001: MDSSSSSSSA AARRRINAIH SHLVTSSRSS PLLRSNPTAG EFCLDNGYSV VLPEKLNTGS WNVYRSAKSP FKLVSRFPDH PDIATLHDNF EHAVHDFRDY
101: KYLGTRVRVD GTVGDYKWMT YGEAGTARTA LGSGLVHHGI PMGSSVGIYF INRPEWLIVD HACSSYSYVS VPLYDTLGPD AVKFIVNHAT VQAIFCVAET
201: LNSLLSCLSE MPSVRLVVVV GGLIESLPSL PSSSGVKVVS YSVLLNQGRS NPQRFFPPKP DDVATICYTS GTTGTPKGVV LTHANLIANV AGSSFSVKFF
301: SSDVYISYLP LAHIYERANQ ILTVYFGVAV GFYQGDNMKL LDDLAALRPT VFSSVPRLYN RIYAGIINAV KTSGGLKERL FNAAYNAKKQ ALLNGKSASP
401: IWDRLVFNKI KDRLGGRVRF MTSGASPLSP EVMEFLKVCF GGRVTEGYGM TETSCVISGM DEGDNLTGHV GSPNPACEVK LVDVPEMNYT SADQPHPRGE
501: ICVRGPIIFT GYYKDEIQTK EVIDEDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY AKCKFVGQCF IYGDSFNSSL VAVVSVDPDV
601: LKSWAASEGI KGGDLRELCN NPRVKAAVLS DMDTVGREAQ LRGFEFAKAV TLVLEPFTLE NGLLTPTFKI KRPQAKEYFA EAITNMYKEL GASDPSANRG
701: L

Arabidopsis Description

LACS6Long chain acyl-CoA synthetase 6, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.